Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02814 ATGGATGTTCAAGTGATAAATGCGGAAGGAAGTGGTGATCAGTCAAAGGCAGATAACGGGGATGCAGAACCAAGTGACAGTGAAGTTAATAATACTGAAAAGTATGGAACTCATGCGGAGGACCGGATTTCTGAACCATATGTGGGTATGGAATTTGACACTGTAGATGTTGCTAAGGCATTTTATAATGAATATGCCAGACACATGGGTTTTAGCTCTAAAGTTAACCCATATGGTCACTCTAAAATTGATGGTGAAAATTATAGGGAGTTTGTATGTGGTAGGGAAGGTTTAAGAAAAGGACTAAATGAAAGTTGCAATGCAATGATTAGGATCGAGCTAAAGGGTCAAAATAAATGGGTGGTAACAAAATTAGTGAAGGAGCATACTCATTCCCTGTTCAGTTCCAGTAAGGCATACAATAATCACCCAAGTAAGCATTTTTCTAGTGTTGGTAGGACAATGCCTGAAACTTATCAAGGAGTGGGTCTTGTTCCTAGTGGTGTTATGTATGTATCTATGGATGGTCATCGTGTTTCGAATCAGAATACTCGTGGGATGAAGAATATTCATACCACTCCTGCTGAACGAAGTCACCCAGTTAAAAATTCCTCATTGATGAATTATACTGTTAGGCCTTCTTTGCAAAACCGGACATTGGGGAGGGATGCTCATAATCTGCTGGAGTACTTCAAGAAGATGCAGGCTGAGAATCCTGGTTTCTTCTATGCTATACAACTTGATGAAGACAATCGAATGTCTAATGTCTTTTGGGCAGATGCAAGATCAAGGACAGCATACAGTTATTACGGTGACACAGTTCATCTTGACACAACTTACAAAATAAATCAATATAGAGTGCCATTTGCTCCTTTTACTGGGGTAAATCATCACGGTCAAATGGTTTTGTTTGGTTGTGCGCTCCTTTTGGATGATTCTGAGGCATCTTATTTATGGCTGTTGAAGACATTTCTGACGGCAATGAATGATTGTCAGCCTGTCTCTATAACTACTGATCAAGATAGAGCCTTGCAAACTGCAGTTTCTCAAGTTCTCCCACAAACCCGCCACTGTATTAGCAAGTGGCATATCTTGAGAGAAGGTCAAGAAAAGTTGGCTCATGTATGTCTTGTGCATCCAAATTTCCAGGTTGAACTTTATAATTGTATTAACATGACAGAAACCATTGATGAGTTTGAGTCATTTTGGAGTTGTATCATCGATAAATATGAACTCAGAAGAAATGATTGGCTCCAGTCATTGTATAATGCTCGTGCTCAATGGGTTCCAGCATTCTTTCGCAATTCGTTTTTTGCAGCATTATCTCCTACTCAAGGTTTTGATGGTTCTTTTTTTGATGGTTATGTCAACCAACAGACAACATTGCCATTGTTCTTCAGGCAGTATGAAAGAGCTTTAGAGAGTTGGATTGAGAAGGAAATAGAAGCAGATTTTGAGACAGTTTGCACAACCCCAGTTTTGAAGACACCTTCACCAATGGAGAAACAGGTTGCTAATCTTTATACAAGAAAAATATTTTCGAAGTTTCAAGATGAGCTTGTTGAAACTTTTGTTTATACTGCGAATAGAATTGAAGGAGATGGACCAAATAGCACATTTAGAGTTGCAAAATTTGAGGATGACCAGAAGGCATACACCGTCTCATTAAACCATTCTGAGTTGAAAGCTAATTGTAGTTGCCAAATGTTTGAGTATTCAGGCATTCTTTGCAGACATATTTTAACAGTTTTCACTGTGACAAATGTACTTACGTTACCACCCCATTACATCTTGAAACGTTGGACAAGAAATGCAAAAAACAGTCCTGGATTGGATGAACATATCGGTGAGTTACATGCACAGGAATCTTTGACAGCAAGATATAGCAATCTATGCAAGGAAGCCATCAGGTACGCTGAGGAAGGGGCAGTAACTGTGGAAACATATAATGCTGCAATAAGTGGTATTAGAGAAGGTGGAAAGAAGGTTGCTAATGTGAAAAGAACTGTTGCCAAAGTATCTCCTCCTAACAATCAGGCCAGTGGGATTGCATATGATGACAGGAAAACTCCCACTCCCACTTCAGATACTACTTCTCTTTTATGGCCGCGGCAAGATGAGATAACGAGGAGGTTTAATCTTAATGATGCTGGTGGTCCTGTTCAATCAGTTGCTGATCTAAACTTGCCACGGATGGCCCCAGTCTCTCTTCATCGTGATGATGGTCCATCTGAAAACATGGTAGTTCTTCCATGCCTAAAATCAATGACATGGATAATGGAGAACAAAAACTCAACTCCTGGGAATAAAGTAGCTGTTATCAATCTTAAGTTGCAAGATTATAGCAGGGTTCCATCCACAGAATCTGAGGTTAAGTTTCATCTTTCTAGAGTTACTTTGGAACCAATGTTGAAGTCTATGGCTTACATCAGCGAACAGCTCTCAACACCAGCTAATAAGGTTGCAGTAATAAATCTCAAGGAAGGCTTGGTGATAGATTTCTGTAGTATAGAAATCAATCTCTCGCTTGCACTCAGCACACTCACAGAGAATACTAGACAAAAAAATACAAATGTACAACATCCAACTCTCAAGGGAGCACTCTCCCTCCACAGGAACAACTTTCTGTCTATACAAAAGCTCCCCGACACAAGACCTCCCTATCTTCTTATAAAGGCCACCCCAACCAACTAA 2694 0.3979 MDVQVINAEGSGDQSKADNGDAEPSDSEVNNTEKYGTHAEDRISEPYVGMEFDTVDVAKAFYNEYARHMGFSSKVNPYGHSKIDGENYREFVCGREGLRKGLNESCNAMIRIELKGQNKWVVTKLVKEHTHSLFSSSKAYNNHPSKHFSSVGRTMPETYQGVGLVPSGVMYVSMDGHRVSNQNTRGMKNIHTTPAERSHPVKNSSLMNYTVRPSLQNRTLGRDAHNLLEYFKKMQAENPGFFYAIQLDEDNRMSNVFWADARSRTAYSYYGDTVHLDTTYKINQYRVPFAPFTGVNHHGQMVLFGCALLLDDSEASYLWLLKTFLTAMNDCQPVSITTDQDRALQTAVSQVLPQTRHCISKWHILREGQEKLAHVCLVHPNFQVELYNCINMTETIDEFESFWSCIIDKYELRRNDWLQSLYNARAQWVPAFFRNSFFAALSPTQGFDGSFFDGYVNQQTTLPLFFRQYERALESWIEKEIEADFETVCTTPVLKTPSPMEKQVANLYTRKIFSKFQDELVETFVYTANRIEGDGPNSTFRVAKFEDDQKAYTVSLNHSELKANCSCQMFEYSGILCRHILTVFTVTNVLTLPPHYILKRWTRNAKNSPGLDEHIGELHAQESLTARYSNLCKEAIRYAEEGAVTVETYNAAISGIREGGKKVANVKRTVAKVSPPNNQASGIAYDDRKTPTPTSDTTSLLWPRQDEITRRFNLNDAGGPVQSVADLNLPRMAPVSLHRDDGPSENMVVLPCLKSMTWIMENKNSTPGNKVAVINLKLQDYSRVPSTESEVKFHLSRVTLEPMLKSMAYISEQLSTPANKVAVINLKEGLVIDFCSIEINLSLALSTLTENTRQKNTNVQHPTLKGALSLHRNNFLSIQKLPDTRPPYLLIKATPTN 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02814 897 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 37 665 IPR031052 GO:0006355
Vimu2g02814 897 MobiDBLite consensus disorder prediction 673 699 - -
Vimu2g02814 897 Pfam MULE transposase domain 274 366 IPR018289 -
Vimu2g02814 897 Pfam FAR1 DNA-binding domain 61 134 IPR004330 -
Vimu2g02814 897 ProSiteProfiles Zinc finger SWIM-type profile. 552 588 IPR007527 GO:0008270
Vimu2g02814 897 Pfam SWIM zinc finger 552 586 IPR007527 GO:0008270
Vimu2g02814 897 SMART 26again6 563 590 IPR006564 GO:0008270
Vimu2g02814 897 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02814 Vimu-Chr2 25892121 25895354 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vimu2g02814 MULE 9.3e-24 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02814 - - gmx:100786516 1489.94