Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02799 ATGAACTTCGTAGTCGCCGACCCCGACGCGCGTCTAGTGCCCGTCCCGGCAGGCAACAAAGTTCGACCTGCAGTTGACGGACGTAAGCCTGTGAAGAAATTGACGCCGGAGACAGAGAAGAACATTTTCTTTTTGGTACAGGATAATCTATCTTTTCCACTTATATGTCCAGATTGGAATGCAGATGAAGAGATCTTACTTCTAGAGGCTATTGAGATGTATGGATTTGGGAATTGGAATGAAGTCGCAGAATATGTTGGAACTAAAAGCAAATCTCAATGTATTGACCACTATAATGCTGTATATATGAATTCACCATGTTTTCCTCTCCCAGATTTGTCTCATGTTATGGGAAAGAGTAGGGATGAACTATTTGCCATGGTTAAAGGACATGAAGCCAAAAAAGGTTTGTTTCTCATGAACTGA 426 0.4202 MNFVVADPDARLVPVPAGNKVRPAVDGRKPVKKLTPETEKNIFFLVQDNLSFPLICPDWNADEEILLLEAIEMYGFGNWNEVAEYVGTKSKSQCIDHYNAVYMNSPCFPLPDLSHVMGKSRDELFAMVKGHEAKKGLFLMN 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02799 141 SUPERFAMILY Homeodomain-like 51 105 IPR009057 -
Vimu2g02799 141 ProSiteProfiles SANT domain profile. 54 106 IPR017884 -
Vimu2g02799 141 FunFam Transcriptional adapter 2 52 104 - -
Vimu2g02799 141 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 46 132 - -
Vimu2g02799 141 Gene3D - 57 106 - -
Vimu2g02799 141 ProSiteProfiles Myb-like domain profile. 59 102 IPR001005 -
Vimu2g02799 141 SMART sant 55 104 IPR001005 -
Vimu2g02799 141 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 59 106 IPR017930 -
Vimu2g02799 141 Pfam Myb-like DNA-binding domain 58 99 IPR001005 -
Vimu2g02799 141 CDD SANT 59 99 IPR001005 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02799 43 134 EF-hand Containing Proteins AT3G07740 65.217 9.87e-40 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu2g02799 Myb_DNA-binding 1.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02799 K11314 - pvu:PHAVU_006G004000g 182.956