Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02776 ATGGGTTATATATGTGATTTTTGTGGAGACCAGAGATCCATGGTGTACTGCCGTTCTGATGCTGCATGCTTATGTTTGTCTTGTGATCGGAATGTTCATTCTGCTAATGCCCTTTCCAGGCGTCATTCACGCACCCTTTTGTGCGAGAGATGCAATTCACAACCTGCCTTTGTGAGGTGTGTTGAAGAGAAAATTTCTCTGTGTCAGAATTGTGATTGGTTGGGTCATGGAGTCCCTACATCTTCGACACATAAGAGACAAGGAATCAGTTGCTACTCTGGCTGCCCTTCAGCCGCCGAACTGTCTTCAATATGGTCATTTGTCTTGGATATCCCTTCCATTAGGGAGTCTACATGTGAGCAAGAACTAGGCTTAATGAGTATTAATGAGAACAGCGAGAGTGTTGGAGTTCCACCTGAAAACGGGAATGTGTCTATTTCAGATCAAGTTACTGATCTACCTGCTTTGGACAGGTCTTTCGTTGGTACATCTTCAATACCCGAGTCAAGCTCCGAAACTCGTATTCTGGACCAGCCAGCTGGACCTGCCAATGAATGTCTGCCAAAGTTGTACTGTCCTGCTACAAAATGCCCTGCATTATGTGAAGATGACAATCTATATGATGATTTTGACATGGATGAAGTGGATCTAAATCTTGAGAACTATGAAGAACTTTTTGGTATGGCCCTCAGTCATTCCGAAGAGCTATTTGAAAATGGTGGAATTGATAGTTTGTTTGGGACAAAAGACATGTCTGCCGGAGATTCCAGTTGTCAGGATGCTATTGCTGCAGAGGGGTCATCAGTTGGACTGGTCAATGCAACACAACCAGCTTGCAGCAACGCAGCATCTGCAGATTCCATTTTGAGTACTAAAACCGAACCGATTCTTTGTTTCACGGGGAGGCAAGCACAATCAAACCTTTCTTTTTCTGGCATTACCGGAGAAAGTAGTGCTGCAGACTATCAAGACTGTGGGGCTTCTTCCATGCTTCTCATGGGAGAACCTCCTTGGTTTGCTCCTTGTCCTGAGAATTCCCTACAATCTGCCAACCGCAGCAATGCTGTCTTGCGTTACAAGGAAAAGAAGAAGGCACGAAAGTTTGAAAAGCAAGTGAGGTATGCCTCTCGCAAGGCAAGGGCCGACGTGAGAAGGCGTGTGAAGGGCCGGTTTGTGAAAGCCGGTGACGTGTACGACTATGACCCTTTGAGCACAACCAGAAGCTGCTGA 1230 0.4585 MGYICDFCGDQRSMVYCRSDAACLCLSCDRNVHSANALSRRHSRTLLCERCNSQPAFVRCVEEKISLCQNCDWLGHGVPTSSTHKRQGISCYSGCPSAAELSSIWSFVLDIPSIRESTCEQELGLMSINENSESVGVPPENGNVSISDQVTDLPALDRSFVGTSSIPESSSETRILDQPAGPANECLPKLYCPATKCPALCEDDNLYDDFDMDEVDLNLENYEELFGMALSHSEELFENGGIDSLFGTKDMSAGDSSCQDAIAAEGSSVGLVNATQPACSNAASADSILSTKTEPILCFTGRQAQSNLSFSGITGESSAADYQDCGASSMLLMGEPPWFAPCPENSLQSANRSNAVLRYKEKKKARKFEKQVRYASRKARADVRRRVKGRFVKAGDVYDYDPLSTTRSC 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02776 409 CDD Bbox1_BBX-like 47 89 - -
Vimu2g02776 409 ProSiteProfiles Zinc finger B-box type profile. 43 89 IPR000315 GO:0008270
Vimu2g02776 409 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 2 396 - -
Vimu2g02776 409 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Vimu2g02776 409 SMART bboxneu5 48 89 IPR000315 GO:0008270
Vimu2g02776 409 SMART bboxneu5 4 47 IPR000315 GO:0008270
Vimu2g02776 409 Pfam CCT motif 352 394 IPR010402 GO:0005515
Vimu2g02776 409 CDD Bbox1_BBX-like 4 47 - -
Vimu2g02776 409 ProSiteProfiles CCT domain profile. 352 394 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02776 Vimu-Chr2 25334323 25340586 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02776 1 408 C2C2-CO-like Transcription Factor Family AT3G07650 56.635 7.12e-155 440
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Vimu2g02776 CCT 1.9e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02776 - - pvu:PHAVU_006G005200g 759.985