Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02772 ATGTCGCGGAAGGGTTTGATGGAACAAGATCTGAGTAAGTTGGATGTGACAAAGTTGCATCCACTTTCACCAGAAGTAATATCTCGGCAAGCTACTATTAATATTGTTGATATTGATGTATTAAATTGCATCCTGATAGGTACTATTGGTCATGTGGCCCATGGCAAGTCAACAGTTGTGAAAGCAATTTCAGGTGTCCAGACTGTGCGTTTCAAAAATGAGTTGGAGCGTAACATTACAATCAAGCTTGGCTATGCAAATGCAAAAATATACAAGTGTGAAGATGAACGGTGTTCAAGGCCTATGTGCTACAAGGCTTTTGGAAGTGGGAAAGAAGATAGTCCTATGTGTGATGTGCCAGGGTTTGAAAACAGCAAGATGAAATTGCTGAGACATGTTTCATTTGTGGATTGTCCAGGACATGATATTCTCATGGCTACTATGCTTAATGGAGCAGCAATCATGGATGGAGCTTTACTACTCATAGCTGCTAATGAAAGCTGCCCACAACCACAAACCTCTGAGCACTTAGCTGCTGTGGAAATTATGCGTCTACAGCATATAATAATCCTTCAGAACAAGGTTGACTTGATTCAGGAAAATGTGGCAATCAATCAGCATGAAGCAATTTCAAAGTTTATACAGGGAACCGTTGCTGATGGTGCACCAGTAGTACCCATTTCAGCACAGTTAAAGTATAATATTGATGTTGTGTGTGAGTATATTGTGAAGAAGATCCCAATCCCTGAGAGGAACTTTGTTTCTCCACCTAATATGATCGTGATCCGGTCGTTTGATGTCAATAAACCTGGTTTTGAGGTTGATGAAATAAAAGGAGGTGTAGCTGGTGGAAGCATTCTGAGGGGTGTTTTGAAGGTGAATCAATTCATTGAAGTTCGACCTGGGATTGTTGTTAAAGATGAGAGTGGAAATATCCGATGCACACCAATATACTCAAGAATAGTTTCATTGTATGCTGAACAAAATGAGCTTCAATTTGCTGTACCTGGAGGCCTAATCGGTGTTGGGACAACGATGGATCCCACACTGACACGAGCTGATAGGCTGGTAGGTCAAGTTCTTGGAGAGGTTGGATCCCTACCTGAGGTTTTTGTTGAACTCGAGGTAAACTTTTTCCTTCTTAGACGGCTTCTTGGCGTCCGAACAAAAGGGTCTGAGAGACAGGGGAAGGTATCGAAACTGGCGAAAGGAGAGATGCTAATGTTGAACATAGGATCAATGTCAACGGGGGCGAGAGTAATTGCTGTGAAGAATGACTTGGCGAAGTTGCAACTTACATCCCCGGTGTGCACTAGCAAGGGTGAGAAGATAGCACTTAGTCGACGTGTTGAGAAGCATTGGCGTCTTATTGGATGGGGCCAAATCCAAGCAGGAATCACCCTTGACGTCCCACCTGCCCCCCATCTCAATTGA 1434 0.431 MSRKGLMEQDLSKLDVTKLHPLSPEVISRQATINIVDIDVLNCILIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDERCSRPMCYKAFGSGKEDSPMCDVPGFENSKMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAISKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIPERNFVSPPNMIVIRSFDVNKPGFEVDEIKGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIRCTPIYSRIVSLYAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPEVFVELEVNFFLLRRLLGVRTKGSERQGKVSKLAKGEMLMLNIGSMSTGARVIAVKNDLAKLQLTSPVCTSKGEKIALSRRVEKHWRLIGWGQIQAGITLDVPPAPHLN 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02772 477 CDD eIF2_gamma 44 251 IPR044128 GO:0005525
Vimu2g02772 477 CDD eIF2_gamma_III 368 462 IPR015256 -
Vimu2g02772 477 Pfam Elongation factor Tu GTP binding domain 43 247 IPR000795 GO:0003924|GO:0005525
Vimu2g02772 477 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 41 250 IPR000795 GO:0003924|GO:0005525
Vimu2g02772 477 Gene3D - 43 251 IPR027417 -
Vimu2g02772 477 PRINTS GTP-binding elongation factor signature 150 161 IPR000795 GO:0003924|GO:0005525
Vimu2g02772 477 PRINTS GTP-binding elongation factor signature 45 58 IPR000795 GO:0003924|GO:0005525
Vimu2g02772 477 PRINTS GTP-binding elongation factor signature 134 144 IPR000795 GO:0003924|GO:0005525
Vimu2g02772 477 PRINTS GTP-binding elongation factor signature 188 197 IPR000795 GO:0003924|GO:0005525
Vimu2g02772 477 SUPERFAMILY Translation proteins 251 365 IPR009000 -
Vimu2g02772 477 FunFam Eukaryotic translation initiation factor 2 subunit gamma 252 367 - -
Vimu2g02772 477 CDD eIF2_gamma_II 252 365 IPR044127 GO:0000049
Vimu2g02772 477 FunFam Eukaryotic translation initiation factor 2 subunit gamma 368 467 - -
Vimu2g02772 477 Pfam Elongation factor Tu domain 2 279 361 IPR004161 GO:0005525
Vimu2g02772 477 Pfam Initiation factor eIF2 gamma, C terminal 373 462 IPR015256 -
Vimu2g02772 477 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 366 463 IPR009001 -
Vimu2g02772 477 Gene3D Translation factors 253 367 - -
Vimu2g02772 477 Gene3D Translation factors 368 466 - -
Vimu2g02772 477 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 FAMILY MEMBER 1 470 - -
Vimu2g02772 477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 253 IPR027417 -
Vimu2g02772 477 FunFam Eukaryotic translation initiation factor 2 subunit gamma 41 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02772 Vimu-Chr2 25279488 25283626 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02772 1 474 Eukaryotic Initiation Factors Gene Family AT1G04170 88.632 0.0 869
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02772 K03242 - gmx:100805852 904.049