Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02769 CCCACTCTGGCGACGGCGCCAGTCCCGGGTTTGCTCCTTTCACCATTCTTTGTTGTTCTCCTTCAGTTTCACTCTTCTATTCTCACTTTCCCCTTTTTCTGCAGGAAAATCTTCATCGGAGGGTTAGCCAAAGAAACCACCCTAGAAACGTTTGTGAATTATTTCGAAAAGTATGGCGAGATAACGGACTCCGTTATCATGAAGGACCGTCAAACGGGTCGACCCAGGGGCTTCGGGTTCATCACCTATGCGGATCCCTCCGTCGTTGACCAAGTCATTCAGGAGAACCACATCATCAGCGGCAAGCAGGTACTCTTTTTTTCTTCACTCTTTTCCTGCGTTTTGGGCCAAGAAACCCACGGTTTTGATCCTTTCTTGGCATATTACTCCTCCCAGGTTGAAATCAAGAGGACCATTCCCAAGGGTTCGTCGCAGGCTAATGACTTCAAAACCAAGAAAATCTTCGTCGGCGGTATTCCAACATCAGTATCCGAAGGTCCAATACTCGTTCACATAATACTAATAGTTATCACTTCGTTTATCCATTATCCATGTTTATGTTGCTTTAGATAA 573 0.4572 PTLATAPVPGLLLSPFFVVLLQFHSSILTFPFFCRKIFIGGLAKETTLETFVNYFEKYGEITDSVIMKDRQTGRPRGFGFITYADPSVVDQVIQENHIISGKQVLFFSSLFSCVLGQETHGFDPFLAYYSSQVEIKRTIPKGSSQANDFKTKKIFVGGIPTSVSEGPILVHIILIVITSFIHYPCLCCFR 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02769 190 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 37 97 IPR000504 GO:0003723
Vimu2g02769 190 Gene3D - 33 106 IPR012677 -
Vimu2g02769 190 SUPERFAMILY RNA-binding domain, RBD 35 166 IPR035979 GO:0003676
Vimu2g02769 190 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 35 165 - -
Vimu2g02769 190 SMART rrm1_1 36 108 IPR000504 GO:0003723
Vimu2g02769 190 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 35 104 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02769 Vimu-Chr2 25258745 25259455 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02769 37 106 Eukaryotic Initiation Factors Gene Family AT1G71770 35.211 2.94e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02769 K12741 - gmx:100801373 180.259