Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02762 ATGGCCGAAGCTTCAACAATCACCTTCTTTTCTACTCTCCTTCCCCCTTTCCAACCCAACATCCAGGTGTCTCACCGTCCCCTGAGTCTCCCACGGAAGCTCCAGGTTCGATGCTCGGTGTCCGCCGGTTCGACTCCCCAGAATGCGGTGGCTTGGGGGTGCGAGATTGAGTCGCTGGAGAGTGCGTCGGCATTGCAGAGTTGGCTATCGGAATCGGGTCTTCCACCGCAGAAGATGGGGATAGATAGGGTGGAGGTGGGAGAGAGAGGACTTGTGGCTTTGAAGAACATAAGGAAAGGGGAGAAGTTGCTCTTTGTGCCTCCCTCTCTTGTCATCACTCCCAATTCAGAATGGAGTTGTCCAGAACCTGGTGAGGTATTGAAAAGAAATTCAGTGCCAGATTGGCCTTTGCTTGCAACTTACCTCATAAGTGAAGCTAGCCTCATGGAATCTTCAAGATGGAGCAATTATATATCAGCCTTACCTCGTCAACCTTACTCGCTTCTTTACTGGTCACAAGCAGAGCTAGATCGCTACTTGGAAGCTTCGCAGATTCGGGAGAGAGCAATTGAAAGGATTAATAATGTTATTGGAACATACAATGATTTGAGGCTCAGAATATTTTCCAAATACCCTGATTTATTCCCTGATGAGGTGTTCAACATTGAGTCCTTCAAATGGTCATTCGGTATTCTTTTCTCCCGCTTGGTTCGGTTACCCTCAATGGATGGACAGGTTGCATTGGTTCCTTGGGCAGATATGCTAAATCATAGCTGTGAGGTGGAGACATTTTTGGATTATGACAAGCAATCAAAGGGAATTGTCTTCACGACAGATCGGCCCTATCAACCAGGTGAGCAGGTGTTTATTTCGTATGGAAAAAAATCAAACGGGGAGCTTTTGCTATCTTATGGATTTGTTCCGAAGGAAGGTGGCAATCCCAGTGATTCAGTTGAGTTGTCACTGTCACTAAAGAAATCCGATGCATCCTACAAGGAGAAGTTAGAACTGTTGAAAAAATATGGATTATCAGCGACGTCATTTTTCAGATGGGAGACATTAATATTTCTTTCTGGTCTGATAACTGGTTGGCCATTGGAATTAATGGCTTATGCTTATTTAGCTGTCAGTCCTTCAAGCATGGGAGAAAATTTTGAAGAGATGGCTGCTGCAGCATCAAATAGTACCATCTCCAAGAAGGATTTGAGATATCCTGAAATAGAGGAGCAAGCATTGCAATTCATACTAGACAGCTGTGAAGCAAGCATATCAAAATACAACAAGTTCTTGCAGGCAAGGAAACACTTTAATAAGGAAGCTTAA 1323 0.446 MAEASTITFFSTLLPPFQPNIQVSHRPLSLPRKLQVRCSVSAGSTPQNAVAWGCEIESLESASALQSWLSESGLPPQKMGIDRVEVGERGLVALKNIRKGEKLLFVPPSLVITPNSEWSCPEPGEVLKRNSVPDWPLLATYLISEASLMESSRWSNYISALPRQPYSLLYWSQAELDRYLEASQIRERAIERINNVIGTYNDLRLRIFSKYPDLFPDEVFNIESFKWSFGILFSRLVRLPSMDGQVALVPWADMLNHSCEVETFLDYDKQSKGIVFTTDRPYQPGEQVFISYGKKSNGELLLSYGFVPKEGGNPSDSVELSLSLKKSDASYKEKLELLKKYGLSATSFFRWETLIFLSGLITGWPLELMAYAYLAVSPSSMGENFEEMAAAASNSTISKKDLRYPEIEEQALQFILDSCEASISKYNKFLQARKHFNKEA 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02762 440 Gene3D set domain protein methyltransferase, domain 1 29 306 - -
Vimu2g02762 440 Gene3D - 312 439 IPR036464 -
Vimu2g02762 440 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 323 427 IPR036464 -
Vimu2g02762 440 ProSiteProfiles SET domain profile. 77 293 IPR001214 GO:0005515
Vimu2g02762 440 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 60 428 - -
Vimu2g02762 440 SUPERFAMILY SET domain 61 310 IPR046341 -
Vimu2g02762 440 Pfam SET domain 89 293 IPR001214 GO:0005515
Vimu2g02762 440 Pfam Rubisco LSMT substrate-binding 326 432 IPR015353 -
Vimu2g02762 440 CDD SET_RBCMT 72 307 IPR044431 GO:0016279|GO:0018022
Vimu2g02762 440 SMART set_7 77 299 IPR001214 GO:0005515
Vimu2g02762 440 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 46 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02762 Vimu-Chr2 25115447 25123429 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02762 138 262 NAC Transcription Factor Family AT3G56570 28.125 8.20e-06 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vimu2g02762 SET 7.5e-17 No_clan