Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02751 ATGGAAGTAAATCAGCACATTACTCGATCGGTTTCCGTTCCGGTGAATATCAAAGCCGCTAATTTAAGACGCGCAGATTCTAGAAGGTTGGTTCGTGTAATTTCGGCAAGATCACTTCTAACAACTGGCGACGGCATCTCAACTCAGAATGCTTCCGGATCAGAGATTGGCATCGTTGATGACATGGTGGTCGCCTGTCGAGACAATCAAAACCATGTGTATTGTTGGTCGAAACTAGAATTCCGGTGTGAGGTAGATTCTCAAGAAAGTGTCCATGCTTACATGTATCAAGTGATCCAAGCAGCTGATAGTCGTTCCTTCAAGTTTTGTTTAATATGTGATCTTGAGGATAGTAATGCTTCCCCACCTTTGATAGAAAAGGGGCTTGTTGAAGATACTTCTGAGGATATTCCAGAGGAAGATGCAGTTTGTAGGATTTGTTTGGTAGAGCTTGCAGAAGGAGGTAATACTCTTAGGATGGAATGCAGTTGTAAAGGTGAGCTTGCACTTGCTCACCAAGACTGTGCAGTAAAGTGGTTTAGTATCAAAGGAAACAAAACCTGTGATGTCTGCAAGCAAGAAGTCCTTAACCTCCCCGTAACACTCTTGAAAATTTCTAACCCTCAAACTGTTTCTCCACAGCCAATGAATGCACCACGACCACAGCAGAGAGAAGTGACTTCTTATAGGTAA 693 0.43 MEVNQHITRSVSVPVNIKAANLRRADSRRLVRVISARSLLTTGDGISTQNASGSEIGIVDDMVVACRDNQNHVYCWSKLEFRCEVDSQESVHAYMYQVIQAADSRSFKFCLICDLEDSNASPPLIEKGLVEDTSEDIPEEDAVCRICLVELAEGGNTLRMECSCKGELALAHQDCAVKWFSIKGNKTCDVCKQEVLNLPVTLLKISNPQTVSPQPMNAPRPQQREVTSYR 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02751 230 ProSiteProfiles Zinc finger RING-CH-type profile. 136 198 IPR011016 GO:0008270
Vimu2g02751 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 199 IPR013083 -
Vimu2g02751 230 Pfam RING-variant domain 144 191 IPR011016 GO:0008270
Vimu2g02751 230 SUPERFAMILY RING/U-box 140 195 - -
Vimu2g02751 230 MobiDBLite consensus disorder prediction 209 230 - -
Vimu2g02751 230 PANTHER OS02G0165000 PROTEIN 131 230 - -
Vimu2g02751 230 SMART ringv_2 143 192 IPR011016 GO:0008270
Vimu2g02751 230 CDD RING_CH-C4HC3_MARCH 144 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02751 Vimu-Chr2 24812594 24815685 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02751 61 198 C3H Transcription Factor Family AT2G37950 29.496 3.11e-13 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02751 - - pvu:PHAVU_006G002500g 197.978
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02751 2 24812594 24815685 Vimu1g00159 1 906551 908668 PCT