Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02748 ATGGATCACTCGTCTATGCTTTTATTGTCCCACCTTCAACTTCAAAACTTGTGGTCATCTTTGATCATTGTTGTAATTTTCTGCATAACCATTCTCAAAGGCCCTGGATTTCATTTGTTGAAGAAATCCAAGAATGAAGAAGTACCCTTACCTCCTGGTCCCAAACCATGGCCTATCATCGGTAGCCTTCCTGAAATGCTTGCAACTAGACCTACATTCAGGTGGATAAACAACCTAATGAAGGGAATGAAAACTGAGATTGCTTGCATTCGCCTGGGCAATGTTCATGTTATCCCCGTAACTTGTCCCATCATTGCTCGTGAATTCTTGAGGAAACAAGATGCTACTTTTGCTTCTAGACCCACAAGCATAACCACTTCTCTTATCAGTGGTGGATATCTCACCACAGCACTTGTGCCCTTAGGGGAACAATGGAAGAAAATGAGAAGAATTGTTAGCAATGAGCTGTTGTCCACCACCATTCACCACCAGCTTCAACACAAGAGGCTTGAAGAAGCTAACAACCTTGTCTTTTACATCTACAATAAGTGCAAAAAAAACGTCAACGTTAATGTGGGTCTTGTGAATGTAAGGGATGTTGCGCAACACTATTCCTGCAACGTGATCAAGAATTTGAGCTTTGGTATGAGGTATTTTGGGGAGGGTAAGAATGATGGAGGACCTGGTTGTGAGGAAGTAGAACATCTTGAAGCCATTTTTGTATTGCTAAAGTACATTTATGACTTCAGTGTTTCTGATTATGTTCCTTGCTTGAGAGGACTTGACTTGGACGGCCATGAGAACAAGGTGAAGAAGGCATTACAAACCGTGAACAAGTATCACGAACCCATCATTGACCAACGAATCATAGAATGGAATGATGGATCCAAGATTCATACAGAAAATTTTCTTGATATGCTCATCTCACTCAGAGATGCCAACAATAATCCAGTATTGACTACACAAGAAATCAAGGCACAAATCATTGAATTGATGATGGCTGCTGTGGATAACCCATCAAATGCAGTCGAGTGGGGTCTGGCAGAGATGATAAACCAGCCTGAGTTGCTTCAACATGCCACAGAAGAATTGGACAGGGTAGTTGGAAAAGAGAGATTGGTCCAAGAATCAGACATTCCAAAGCTGAACTACATAAAAGCATGTGCAAGAGAAGCTTTTCGCCTTCATCCCATTGCACCTTTCAATGTTCCTCATGTTTCCGTGAAAGACACCATAGTGGGAAAGTACGTAATCCCAAAGGGGAGCCATGTGCTGTTAAGTAGGCAGGAACTTGGACGAAACTCAAAAGTTTGGGGTGACGAAGCTCTCAAGTTTAAGCCAGAACGTCATCTTAAGGGCAATGTGCTTTTAACAGAGCCAGATTTGAATTTTATATCTTTCAGCACAGGAAGACGTGGTTGTCCAGGAATCATGCTTGGAACAACAATGACAGTGATGTTGTTTGCTAGGTTGCTTCATTCCTTTAGTTGGACTCCGCCGCCCAATGCCTCACGCATCAACCTTGCAGAGGGCCACCGTGATATACTTCTGGCTAACCCACTTGTGGCATTGGCAAAGCCGAGATTAGCACCACAACTTTATACTATGTGA 1611 0.4271 MDHSSMLLLSHLQLQNLWSSLIIVVIFCITILKGPGFHLLKKSKNEEVPLPPGPKPWPIIGSLPEMLATRPTFRWINNLMKGMKTEIACIRLGNVHVIPVTCPIIAREFLRKQDATFASRPTSITTSLISGGYLTTALVPLGEQWKKMRRIVSNELLSTTIHHQLQHKRLEEANNLVFYIYNKCKKNVNVNVGLVNVRDVAQHYSCNVIKNLSFGMRYFGEGKNDGGPGCEEVEHLEAIFVLLKYIYDFSVSDYVPCLRGLDLDGHENKVKKALQTVNKYHEPIIDQRIIEWNDGSKIHTENFLDMLISLRDANNNPVLTTQEIKAQIIELMMAAVDNPSNAVEWGLAEMINQPELLQHATEELDRVVGKERLVQESDIPKLNYIKACAREAFRLHPIAPFNVPHVSVKDTIVGKYVIPKGSHVLLSRQELGRNSKVWGDEALKFKPERHLKGNVLLTEPDLNFISFSTGRRGCPGIMLGTTMTVMLFARLLHSFSWTPPPNASRINLAEGHRDILLANPLVALAKPRLAPQLYTM 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02748 536 Gene3D Cytochrome P450 37 515 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu2g02748 536 PANTHER CYTOCHROME P450 703A2-RELATED-RELATED 22 536 - -
Vimu2g02748 536 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 467 476 IPR017972 GO:0005506|GO:0016705
Vimu2g02748 536 PRINTS E-class P450 group I signature 105 126 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu2g02748 536 PRINTS E-class P450 group I signature 343 369 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu2g02748 536 PRINTS E-class P450 group I signature 464 474 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu2g02748 536 PRINTS E-class P450 group I signature 204 222 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu2g02748 536 PRINTS E-class P450 group I signature 323 340 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu2g02748 536 PRINTS E-class P450 group I signature 474 497 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu2g02748 536 PRINTS E-class P450 group I signature 386 404 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu2g02748 536 FunFam Cytochrome P450 9 43 532 - -
Vimu2g02748 536 SUPERFAMILY Cytochrome P450 51 528 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu2g02748 536 Pfam Cytochrome P450 51 518 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02748 Vimu-Chr2 24743787 24745650 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02748 21 534 Cytochrome P450 AT5G05260 52.510 0.0 582
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02748 - K14984 vra:106779949 986.482