Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02733 ATGAGTATTCCACAAGCTGCTGCTGCTGCTGCTTCTTCTGCTGCAACCAGCCCTCCTCCACATCTATATCCACAGGAGCTACAGCTTAAGCTTTACCAAGCCTTCATATTCTCAATTCCTATACTCTTCTCCATCATTCTCTTTCTCTTGTTTTACTTGTTCTACCTCAAGAGAAGGGCCTCCTCTCTCTCTTCCTCTTCTCCCCATTTGCTTCCAAGGACCATTGCCAATCCACCAACCACCACTCCCTATCATTCATCACCCTGTCAATTGGATCTGACCCTCCAATTCCTTGATATGCTTCCAAAGGTTTTATTTGATGAGGATTTGCTAGCAAGAGATTCCCTGGAATTTTCAGTAGATAAAGTGCTGGAAAGCACTTTGGAAACTCTGTGTTGTGTTTGTCTGGGGGAGTTTGAGGTGAAGGAAGAGGTGGTGCAGATTCCTTATTGCAAGCACGTGTTCCACTTGGATTGCATACATCATTGGCTTCAATCAAACTCCACTTGTCCACTTTGTAGATGTTCCATCATCCCCACTACTACCAAGTTCATCAATCCATCACCGCTTATTAATATTATATCAGACCCACCCCAGCATGGTGCTATCTTTTCAGACTCTCCATTGCACACTCCACCATTGCCACCTCACTCACAACATCATCATCAACTTGGTGCTTCCTCAAATGCTACTAATTTTCCAAGGGAATGA 711 0.443 MSIPQAAAAAASSAATSPPPHLYPQELQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSPHLLPRTIANPPTTTPYHSSPCQLDLTLQFLDMLPKVLFDEDLLARDSLEFSVDKVLESTLETLCCVCLGEFEVKEEVVQIPYCKHVFHLDCIHHWLQSNSTCPLCRCSIIPTTTKFINPSPLINIISDPPQHGAIFSDSPLHTPPLPPHSQHHHQLGASSNATNFPRE 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02733 236 CDD RING-H2_EL5-like 132 174 - -
Vimu2g02733 236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 179 IPR013083 -
Vimu2g02733 236 SMART ring_2 132 173 IPR001841 -
Vimu2g02733 236 PANTHER RING-H2 FINGER PROTEIN ATL16 12 194 IPR044600 GO:0016567|GO:0016740
Vimu2g02733 236 MobiDBLite consensus disorder prediction 221 236 - -
Vimu2g02733 236 ProSiteProfiles Zinc finger RING-type profile. 132 174 IPR001841 -
Vimu2g02733 236 MobiDBLite consensus disorder prediction 214 236 - -
Vimu2g02733 236 Pfam Ring finger domain 132 174 IPR001841 -
Vimu2g02733 236 SUPERFAMILY RING/U-box 131 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02733 Vimu-Chr2 24380082 24381735 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02733 28 179 C3H Transcription Factor Family AT4G10150 39.474 8.90e-32 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02733 K19039 - gmx:100794298 296.204