Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02717 ATGCACTTGGCGGAGATGGAGGCGGCACGAGCAGGTATGCCGGTGGTGTGTGTGAGGCATGAGAGCGCTGGGGGCCCAAACGTGAAGGACATTCACATGGAGAATTTCAATATCTCTGTTGGTGGGCGGGATCTAATTGTGGATGGTTGTGTCACACTTTCGTTTGGAAGGCATTATGGGTTGGTAGGAAGGAACGGGACAGGAAAAACCACTTTTCTTAGACACATGGCTATGCATGCCATCGATGGTGTTCCAAGGAATTGTCAAATATTGCACGTGGAGCAAGAGGTGACAGGTGATGCTACCACAGCCTTGCAGTGTGTCCTTAACTCTGACATTGAGAGGACTCAGCTTATTGAAGAAGAAGCTCAGTTAGTTGCCCAACAGAGGGAATTTGAGGACAAAATTGAAAAGGGTGACTCAAATGGAATGGTTGGCAGGGATAGCATTTCACAGAGGCTTGAGGAAATATATAAGAGGCTTGAACACATTGATGCTGATTCTGCAGAGGCACGAGCAGCATCTATATTAGCTGGTTTGAGTTTCTCTCCTGAGATGCAGAAGAAGGCAACAAAAACATTTTCAGGAGGATGGCGAATGCGCATAGCTCTTGCTCGTGCACTGTTTATAGAGCCTGATATATTGCTTCTTGACGAGCCTACGAATCATCTTGATCTTCATGCTGTCTTATGGCTTGAGTCATACTTGGTTAAATGGCCAAAAACATTTATTGTTGTTTCACATGCGAGAGAATTTTTAAACACGGTGGTTACTGATATAATTCACTTGCAAAACCAAAAGTTGACTACTTATAAAGGAAATTATGATACTTTTGAGAGGACCCGAGAAGAACAAATTAAAAACCAGCAGAAAGCATTGGAGGCAAATGAGCGCGCAAGATCTCATATGCAGACCTTTATTGACAAGTTCCGTTATAATGCAAAGAGGGCATCACTCGTTCAATCTAGAATTAAGGCTTTGGAGCGAATGGGCCATGTGGATGAGATTGTTAATGATCCTGACTACAAATTTGAGTTCCCCACTCCAGATGATAGACCTGGTCCACCGATTATAAGTTTCAGTGATGCATCATTTGGTTATCCCGGGGGCCCCATTCTTTTTAAGAATTTGAACTTTGGGATTGATCTTGACAGCCGTATTGCAATGGTTGGACCAAATGGTATTGGTAAATCAACTATACTTAAGTTAATTGCTGGGGAACTTCAGCCCAGTTCTGGGACCGTCTTCCGTTCTGCTAAGGTTCGTATAGCAGTGTTCAGTCAGCACCATGTTGATGGTCTGGACTTATCCTCAAATCCTCTACTGTATATGATGCGGTGCTATCCTGGAGTTCCAGAACAGAAGCTTCGAGCTCACTTAGGTTCTTTTGGTGTAACTGGAAATCTTGCACTGCAGCCAATGTATACTTTGTCTGGTGGTCAGAAAAGCAGGGTTGCCTTTGCAAAGATAACTTTTAAGAAGCCACACATAATATTGCTTGATGAGCCTTCCAATCATCTGGATTTGGATGCTGTTGAGGCGCTTATCCAAGGTCTTGTCCTGTTCCAAGGAGGCATTCTAATGGTGAGTCACGACGAACACCTTATCTCGGGAAGCGTGGAGGAACTATGGGTTGTATCCGAAGGAAGAGTAACACCGTTCCATGGCACCTTCCAAGATTATAAGAAGATACTCCAATCAGCCTAG 1707 0.4411 MHLAEMEAARAGMPVVCVRHESAGGPNVKDIHMENFNISVGGRDLIVDGCVTLSFGRHYGLVGRNGTGKTTFLRHMAMHAIDGVPRNCQILHVEQEVTGDATTALQCVLNSDIERTQLIEEEAQLVAQQREFEDKIEKGDSNGMVGRDSISQRLEEIYKRLEHIDADSAEARAASILAGLSFSPEMQKKATKTFSGGWRMRIALARALFIEPDILLLDEPTNHLDLHAVLWLESYLVKWPKTFIVVSHAREFLNTVVTDIIHLQNQKLTTYKGNYDTFERTREEQIKNQQKALEANERARSHMQTFIDKFRYNAKRASLVQSRIKALERMGHVDEIVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCYPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGRVTPFHGTFQDYKKILQSA 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02717 568 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 358 567 IPR003439 GO:0005524
Vimu2g02717 568 ProSitePatterns ABC transporters family signature. 194 208 IPR017871 GO:0005524|GO:0016887
Vimu2g02717 568 FunFam ABC transporter F family member 3 1 303 - -
Vimu2g02717 568 CDD ABCF_EF-3 358 550 - -
Vimu2g02717 568 Pfam ABC transporter 261 341 IPR032781 -
Vimu2g02717 568 CDD ABCF_EF-3 31 267 - -
Vimu2g02717 568 SMART AAA_5 383 550 IPR003593 GO:0016887
Vimu2g02717 568 SMART AAA_5 55 267 IPR003593 GO:0016887
Vimu2g02717 568 Pfam ABC transporter 375 505 IPR003439 GO:0005524
Vimu2g02717 568 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 339 561 IPR027417 -
Vimu2g02717 568 Gene3D - 321 568 IPR027417 -
Vimu2g02717 568 Gene3D - 26 320 IPR027417 -
Vimu2g02717 568 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 20 567 - -
Vimu2g02717 568 FunFam ATP-binding cassette sub-family F member 3 320 568 - -
Vimu2g02717 568 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 31 292 IPR027417 -
Vimu2g02717 568 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 31 290 IPR003439 GO:0005524
Vimu2g02717 568 Pfam ABC transporter 52 222 IPR003439 GO:0005524
Vimu2g02717 568 ProSitePatterns ABC transporters family signature. 477 491 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02717 Vimu-Chr2 24071222 24082294 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02717 314 519 Calmodulin-binding Proteins AT2G36910 26.337 6.25e-11 63.5