LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu2g02715	ATGGAAATTTATAGGAACCAGTGGTGGGCCACTCTAGATAAAAAGAAGATAAGGGAAAAGCAGAGCAAAGATAAGGAAGAAGCATCAGCGCAGCAGCGTCAGCAACAGCCTTCACAACCCTCTCGCTCTTCTTCTCCGATCCTTCCACGGCATGTCTTCCATCGAATACCGATTCCGATCGCCGTTCGATTCCTATGCCGTCGCTTGCGAGGCCTTTTCCGAACCTCACCCTCTTTGATATTTCACCTCTTATCTTTCTCTCTCTCTATCTCTTTCTCTCTCTCTATATCTATCTATCTTCGCGCCATGGCCTCTTCCCACGCTATCGAGAAAGACCCCACCTCCAGATACGCTCGGGTGCGTTACCGTCTTATTATTGCTTTCATTGTTTATTTGTTGGCTTCTTTGATCGATCTTCGTGACGTTCTTATTTTTCAGTATGATGAAGTGCTGGGGAAAGGAGCCTTCAAGACTGTGTACAAAGCCTTTGACGAAGTAGATGGAATCGAGGTTGCATGGAACAGGATCAGCGCGGAGGACGTTGTGCAGACGCCGCTGCAGTTGGAGAAGTTGTACTCGGAGGTTCACTTGCTCAAGACCTTGAAGCACGACAATGTCATCAAGCTGTACAATTATTGGATCGATGATACCACAGCCACTGTCAACATGATCACCGAGTTGTTCACCTCCGGAAGTTTGAGGCAGTACCGTAAGAAGCATAAGAATGTGGATATGAAAGCCATTAAGAACTGGGCACGGCAGATTCTCCGTGGCTTGTGTTTTCTACACAGTCAGACTCCTCCTGTCATTCACAGGGACCTGAAATGTGACAATATTTTTGTCAATGGGAATAGTGGACTGGTTAAGATTGGAGATCTTGGATTGGCAATTGTTATGCAACAGCCTACTGCCCGTAGTGTCATCGGTACACCGGAGTTCATGGCCCCAGAGCTTTATGAGGAGAACTACGATGAACTTGTTGACATATATTCCTTTGGTATGTGCATCTTGGAAATGATCACCTGCGAGTACCCATACAGTGAATGTAAAAATCCAGCTCAGATATATAAGAAAGTTACCTCTCTGCCTAATAGTCCTCATATTAAATTGATGAATCAACCAGTGTGCAAGCCTCATCCCATGGAGATAGATTTTAACTCCAGGCGTAGCTCACCAGGCTCGTCTGTGGGAAGAATTGAGGAAATTTCTCAGGTTTCAACTTTTGATCTTGTGAAGAGGACTGAGAATAACGAATTTAGGCTAAGAGGGGAGAAAAATGCTGAAAGTACAATTTCACTTACACTGCGAATTGCAGATGCACGTGGTGGAGCAAGGAATATCCATTTTCCATTCTACATCGATTCCGATACAGCAATTTCCATTGCTGAGGAGATGGTGGAACATCTGGAACTCACACATGAGGATGTATCTGTCATTGCAGAGCTAATACAAGATATGATTGTTAAGCTTGAGCCCAACTGGAAGCCTTTGTGTGAGAACCTCTCATCTGGGTCAGATCATTACAGGGCCCCTTCAGAAGTTCAGAATGAACAGTTGAGCTGTCATTGGCCATTACAATCAAGTGATTACGATATGAAGACGATGTATGAGGATGTAGTTCGTCCTGGGCCTGTGGATGGAGGTTATCAGGAGAAGCAAGAATCTGTTATGTCAGATATATCAGCAGAGTGTGGGATTACGATTGCCTCAGATTCTAAAGATGTAGAACCTGACATTTTTATTTTTGATGAATTCTGGGAGGGGTTTGATGTATTCAATTCCAATTCAGATGACAGGTTTAGTGGGCAAGAGGATGGACAAAAGAATCATTCAGAGAACTCAGAAGGCTCTCTAATCAATTCATGCTGCAGCCCATCTAAAAACTTTGACATGTCAAGCACTGGCTCTCTTAATATAGTTGACAAAGACCCTTCAGACGAGCTGCAGTTGGAGCTTGAAGCAATAGAAACACAGTATCAACAATGCTTTCGTGAGCTTGTGAAGATGAGGGAGGAAGCCATAGAGAATGCAAAAAGGAGATGGATAACAAGGAAGAAGATACCGGTTACGTGA	2073	0.4414	MEIYRNQWWATLDKKKIREKQSKDKEEASAQQRQQQPSQPSRSSSPILPRHVFHRIPIPIAVRFLCRRLRGLFRTSPSLIFHLLSFSLSISFSLSISIYLRAMASSHAIEKDPTSRYARVRYRLIIAFIVYLLASLIDLRDVLIFQYDEVLGKGAFKTVYKAFDEVDGIEVAWNRISAEDVVQTPLQLEKLYSEVHLLKTLKHDNVIKLYNYWIDDTTATVNMITELFTSGSLRQYRKKHKNVDMKAIKNWARQILRGLCFLHSQTPPVIHRDLKCDNIFVNGNSGLVKIGDLGLAIVMQQPTARSVIGTPEFMAPELYEENYDELVDIYSFGMCILEMITCEYPYSECKNPAQIYKKVTSLPNSPHIKLMNQPVCKPHPMEIDFNSRRSSPGSSVGRIEEISQVSTFDLVKRTENNEFRLRGEKNAESTISLTLRIADARGGARNIHFPFYIDSDTAISIAEEMVEHLELTHEDVSVIAELIQDMIVKLEPNWKPLCENLSSGSDHYRAPSEVQNEQLSCHWPLQSSDYDMKTMYEDVVRPGPVDGGYQEKQESVMSDISAECGITIASDSKDVEPDIFIFDEFWEGFDVFNSNSDDRFSGQEDGQKNHSENSEGSLINSCCSPSKNFDMSSTGSLNIVDKDPSDELQLELEAIETQYQQCFRELVKMREEAIENAKRRWITRKKIPVT	690

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu2g02715	690	FunFam	Probable serine/threonine-protein kinase WNK1	141	226	-	-
	Vimu2g02715	690	Coils	Coil	645	672	-	-
	Vimu2g02715	690	MobiDBLite	consensus disorder prediction	597	619	-	-
	Vimu2g02715	690	Pfam	Oxidative-stress-responsive kinase 1 C-terminal domain	431	487	IPR024678	GO:0004674\|GO:0005524
	Vimu2g02715	690	MobiDBLite	consensus disorder prediction	16	47	-	-
	Vimu2g02715	690	ProSiteProfiles	Protein kinase domain profile.	145	452	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu2g02715	690	FunFam	WNK protein kinase	228	373	-	-
	Vimu2g02715	690	MobiDBLite	consensus disorder prediction	16	30	-	-
	Vimu2g02715	690	MobiDBLite	consensus disorder prediction	31	46	-	-
	Vimu2g02715	690	PANTHER	SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED	108	666	-	-
	Vimu2g02715	690	Gene3D	-	429	520	-	-
	Vimu2g02715	690	Gene3D	Transferase(Phosphotransferase) domain 1	228	388	-	-
	Vimu2g02715	690	Gene3D	Phosphorylase Kinase; domain 1	142	226	-	-
	Vimu2g02715	690	Pfam	Protein kinase domain	146	369	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu2g02715	690	SUPERFAMILY	Protein kinase-like (PK-like)	145	365	IPR011009	-
	Vimu2g02715	690	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	269	281	IPR008271	GO:0004672\|GO:0006468
	Vimu2g02715	690	SMART	serkin_6	145	452	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu2g02715	Vimu-Chr2	24050699	24054270	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu2g02715	100	690	MAP Kinase Kinase Kinase	AT5G41990	45.412	1.11e-163	481

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	WNK_NRBP	Vimu2g02715		Pkinase	1.5e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu2g02715	K08867		-	gmx:100783717	795.423