Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02679 ATGGCGCACAGGTTGCTCAGAGACCACGAAGCCGACGGTTGGGAGCGCTCCGATTTTCCTATTATCTGCGAATCCTGCCTCGGCGACAGCCCATACGTTCGAATGATGGGTAATCGGATTGCAGCCGATGTGTTGGGTTGGCTTCAGTACATGGTCATTTGGATCTCACTTTTTGAGGAAAAGATGTCTGTGTACCTTGGTGAAACAATCTCCATGAAGACCAGAGCAGACTATGACAAGGAGTGCAAGATATGTACACGGCCATTCACTGTTTTCAGATGGAGACCTGGTCGAGATGCAAGATATAAGAAAAGTGAGATCTGTCAGACATGCAGTAAATTGAAAAATGTCTGTCAAGTGTGCCTTCTGGACCTTGAATATGGACTACCAGTTCAAGTTCGGGACACTGCTCTCAGTATTGATTCCAATGATGCCATTCCAAAGAGTGATGTTAATAAGGAGTATTTCGCTGAAGAGCATGACCGTAGGGCTAGAGCTGGTATAGATTATGAATCCTCTTATGGTAAAGTACGCCCAAATGATACTATCATGAAGCTTCAAAGGACAACACCATATTACAAGAGAAACCGAGCCCATATTTGCAGTTTCTATATAAGGGGTGAATGTACCAGAGGAGCTGAGTGCCCTTATCGACATGAGATGCCAGTTACTGGGGAGTTGTCTCAACAAAATATTAAAGATCGTTATTATGGAGTGAATGATCCAGTGGCTTTGAAGCTACTTGGCAAGGCAGGAGAGATGACCACTCTGGAGGCTCCTGAGGATGAGAGCATTAAAACTCTTTATGTTGGTGGACTTGATGCTAGGGTCACTGAGCAGGATTTGAGGGATCACTTCTATGCCCATGGAGAAATTGAATCCATCAAAATGGTTCTCCAACGGGCTTGTGCATTTGTAACATATACAACCAGGGAAGGTGCAGAGAAAGCAGCAGAAGAACTCTGCAACAAATTGGTTATTAAGGGCCTAAGGCTAAAGCTGATGTGGGGCAGGCCTCAGACCTCAAAACCTGAGTCTGACAGTTCTGATCAAGCAAGGCAGCAGGCATCTGTAGCTCACAGTGGATTGTTGCCTCGGGCAGTTATATCACAGCAGCAGAACCAGGACCAAACCCAAGGAGTGGTTTACTATAACAATCCCCTACCAGCTCAGCATGAAAGAAGCTACTACCCATCAATGGATCCTCAAAGAATGGGTGCTCTTATTCCATCCCAAGATGGTCCTCCTCCTGGTGGGCCTTCTGGGTCAGGGGAGAACAAGCCTGGTTTGGAAAAGCAGCAGATGCAACATTATCCCCATTCATTGATGCCTCCTCCACCTGGTCAATATCATCATCAGTATTATCCTCCATATGGTTATATGCCTCCAGCTCCCCCTTATCACCATCATCAGCGTCCACCTCCATACAATGCTGCAGGGCCTCCATCACAGCCATCAGCAGGAAATCATCCTTATCAGCATTCTATACAGCCAGGGTCTGGACAGGCCGCAACTGCCCCAGCTGATACTGGAACATCAACTTCAGGGTCACAGCAGCAATAA 1563 0.4671 MAHRLLRDHEADGWERSDFPIICESCLGDSPYVRMMGNRIAADVLGWLQYMVIWISLFEEKMSVYLGETISMKTRADYDKECKICTRPFTVFRWRPGRDARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSIDSNDAIPKSDVNKEYFAEEHDRRARAGIDYESSYGKVRPNDTIMKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYRHEMPVTGELSQQNIKDRYYGVNDPVALKLLGKAGEMTTLEAPEDESIKTLYVGGLDARVTEQDLRDHFYAHGEIESIKMVLQRACAFVTYTTREGAEKAAEELCNKLVIKGLRLKLMWGRPQTSKPESDSSDQARQQASVAHSGLLPRAVISQQQNQDQTQGVVYYNNPLPAQHERSYYPSMDPQRMGALIPSQDGPPPGGPSGSGENKPGLEKQQMQHYPHSLMPPPPGQYHHQYYPPYGYMPPAPPYHHHQRPPPYNAAGPPSQPSAGNHPYQHSIQPGSGQAATAPADTGTSTSGSQQQ 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02679 520 PANTHER PRE-MRNA-SPLICING FACTOR RBM22 1 416 IPR039171 GO:0003723
Vimu2g02679 520 SMART rrm1_1 267 335 IPR000504 GO:0003723
Vimu2g02679 520 FunFam Zinc finger CCCH domain-containing protein 4 187 246 - -
Vimu2g02679 520 ProSiteProfiles Zinc finger C3H1-type profile. 195 222 IPR000571 GO:0046872
Vimu2g02679 520 SUPERFAMILY CCCH zinc finger 197 220 IPR036855 GO:0046872
Vimu2g02679 520 MobiDBLite consensus disorder prediction 482 520 - -
Vimu2g02679 520 MobiDBLite consensus disorder prediction 341 358 - -
Vimu2g02679 520 MobiDBLite consensus disorder prediction 440 481 - -
Vimu2g02679 520 FunFam Zinc finger CCCH domain-containing protein 40 251 347 - -
Vimu2g02679 520 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 266 339 IPR000504 GO:0003723
Vimu2g02679 520 CDD RRM_RBM22 265 338 - -
Vimu2g02679 520 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 268 326 IPR000504 GO:0003723
Vimu2g02679 520 Gene3D - 250 349 IPR012677 -
Vimu2g02679 520 SMART c3hfinal6 195 221 IPR000571 GO:0046872
Vimu2g02679 520 Gene3D - 186 247 - -
Vimu2g02679 520 MobiDBLite consensus disorder prediction 392 520 - -
Vimu2g02679 520 Pfam Torus domain 183 232 IPR032297 -
Vimu2g02679 520 SUPERFAMILY RNA-binding domain, RBD 260 346 IPR035979 GO:0003676
Vimu2g02679 520 MobiDBLite consensus disorder prediction 338 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02679 Vimu-Chr2 23649181 23652982 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02679 253 327 Eukaryotic Initiation Factors Gene Family AT1G49760 33.750 9.03e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02679 K12872 - gmx:100778975 815.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02679 2 23649181 23652982 Vimu1g00260 1 1513671 1517075 PCT