Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02676 ATGGCAGATAACAACAATGCTTCATCTCCTGCTTCAACAACCGAAGGAAAACCAATACTATGCAAAGCTGCCGTTGCTAGAAAAGCTCGTGAGCCATTGGTGATTGAAGAGATAACTGTGGCGCCACCAATGCCCAGTGAGGTGCGGATTCGTGTTATCTGTTCCTCTCTCTGCCACAGTGACATCACTTTTCTGAACCTCCAGGTTCCTCCTGCCATTTTTCCAAGGATTCTTGGTCATGAGGCAACTGGGGTTGTGGAAAGTGTAGGGAAGGATGTAACTGAAGTTAGAAAAGGTGATGTGGTTATTACAGTTTTCCTACCAGAATGTGGGGAATGCATAGATTGCAAATCAAGCAAGAGCAACCGTTGTTCTATTTTCCCTTTCAAGGTGTCTCCCTGGATGCCTCGACATGGTACCTCTAGATTCACTGACAAGAATGGAGAGATCATAAGCCATTTTTTGTTTATTTCAAGCTTCAGTGAGTACACTGTGGTGGACATTGCCAATATTATCAAGATTGATCCAGAAATTCCTCCTGACAGGGCATGCCTTCTTGGATGTGGTGTTTCAACAGGCAAGTTTCTTTCCCAATTACTTTATACAAGAACAACTTTTCTTCTCAAAAATGCTAACAAATATTTTAAACACATTCTTTATCGGGTAGGTGCTGCTTGGAGAACTGCTGGTGTGGAACCAGGGTCTACAGTAGCCATATTTGGGCTGGGGTCTATTGGATTAGCAGTTGCAGAGGGAGCAAGACTTTGTGGAGCAACTAAGATTATAGGTGTTGACGTCAATCCAGAAAAATTTGAAATTGGAAAAAAGTTTGGAGTCACAGATTTTGTCCATGCCGGAGAATGTGAGGACAAACCTGTGAGCCAGGTTATCATAGAGATGACTGGTGGGGGAGCAGATTATTGCTTCGAATGTGTTGGCACGGCATCATTGGTGCATGAAGCATATGCTTCTTGTAGAAAGGGTTGGGGAAAAACAATTGTTTTAGGAGTGGACAAGCCAGGAGCCAGGATAAATCTCAGTTCCCATGAGGTCCTTCATGACGGGAAGTGTCTCATGGGATCCTTGTTTGGAGGTCTCAAACCGAAGTCTCATGTACCTATTCTCCTTAAACGTTACGTGGAAAAGGAATTGCAGTTGGATGAATTTGTCACTCATGAGGTGGAGTTTAAGGACATCAACAAAGCTTTTGATTTATTGAGTACAGGGAAGTGTCTTCGATGTGTGATTTGGATGGGTAAATGA 1263 0.4331 MADNNNASSPASTTEGKPILCKAAVARKAREPLVIEEITVAPPMPSEVRIRVICSSLCHSDITFLNLQVPPAIFPRILGHEATGVVESVGKDVTEVRKGDVVITVFLPECGECIDCKSSKSNRCSIFPFKVSPWMPRHGTSRFTDKNGEIISHFLFISSFSEYTVVDIANIIKIDPEIPPDRACLLGCGVSTGKFLSQLLYTRTTFLLKNANKYFKHILYRVGAAWRTAGVEPGSTVAIFGLGSIGLAVAEGARLCGATKIIGVDVNPEKFEIGKKFGVTDFVHAGECEDKPVSQVIIEMTGGGADYCFECVGTASLVHEAYASCRKGWGKTIVLGVDKPGARINLSSHEVLHDGKCLMGSLFGGLKPKSHVPILLKRYVEKELQLDEFVTHEVEFKDINKAFDLLSTGKCLRCVIWMGK 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02676 420 Gene3D - 221 361 - -
Vimu2g02676 420 Gene3D - 24 413 - -
Vimu2g02676 420 Pfam Zinc-binding dehydrogenase 245 365 IPR013149 -
Vimu2g02676 420 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 223 381 IPR036291 -
Vimu2g02676 420 FunFam S-(hydroxymethyl)glutathione dehydrogenase 221 361 - -
Vimu2g02676 420 FunFam Alcohol dehydrogenase 6 24 197 - -
Vimu2g02676 420 Pfam Alcohol dehydrogenase GroES-like domain 46 174 IPR013154 -
Vimu2g02676 420 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 79 93 IPR002328 GO:0008270|GO:0016491
Vimu2g02676 420 SUPERFAMILY GroES-like 369 417 IPR011032 -
Vimu2g02676 420 SUPERFAMILY GroES-like 14 193 IPR011032 -
Vimu2g02676 420 PANTHER ALCOHOL DEHYDROGENASE 16 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02676 Vimu-Chr2 23608567 23614560 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02676 47 188 Monolignol Biosynthesis Gene Families AT4G37970 27.273 2.86e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02676 K00121 - gmx:100817521 684.485