Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02675 ATGACGAGGAAGAAGGTGGATCTAACATATATAAAGAATGATTCAAAGAGGAAGACAACATTAAACAAAAGGAAAAATGGCTTAGTGAAGAAGATTAATGAAATCAACATTCTTTGTGGGATTGAAGCATGTGCTATAATTTACACTCCAGATAATCCCCAGCCAGAGGTTTGGCCATCTGATAGGGCAGTCCAAAGTGTGCTTTCTAGACTTAGGACAGTGTCTGAACTGGAGAAAGGCAAGAAAAAGTTGTGTCAGGAGAGCTTTTTGAGGCAGAGGATCATCAAAGCACAAGCACAACTCAGGAAACTAAGGAATGAAATAAGGAAGAAAGAGGTGACCCTTCTCATGTTTCAATACCTCAATGCTAATAACAACTTTGACAATTCAAGAATGATTGATCTTAATGATATTTCAAACTTGATTGATCAAAACTTGGAGAAAATAGAAAACAACATCAGCATAAGCCAAACCCAAAAGGTGAAACCTATTGCTGAAAATGGAGGAGAAACCATGAGTTCCCTTGTGAATCGTGTCATAGGGTTAGAGACCCATGTAGAGGCAATGCAACATGATAACTTGTCTATGGACCTCAACAATGGACTAGGAATTTCGTTGGAGATTGTATCATTATGA 636 0.3805 MTRKKVDLTYIKNDSKRKTTLNKRKNGLVKKINEINILCGIEACAIIYTPDNPQPEVWPSDRAVQSVLSRLRTVSELEKGKKKLCQESFLRQRIIKAQAQLRKLRNEIRKKEVTLLMFQYLNANNNFDNSRMIDLNDISNLIDQNLEKIENNISISQTQKVKPIAENGGETMSSLVNRVIGLETHVEAMQHDNLSMDLNNGLGISLEIVSL 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02675 211 PANTHER MADS BOX PROTEIN 3 153 - -
Vimu2g02675 211 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Vimu2g02675 211 SUPERFAMILY SRF-like 1 80 IPR036879 GO:0003677|GO:0046983
Vimu2g02675 211 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vimu2g02675 211 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vimu2g02675 211 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vimu2g02675 211 CDD MADS_SRF_like 2 82 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vimu2g02675 211 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Vimu2g02675 211 FunFam Agamous-like MADS-box protein AGL80 13 98 - -
Vimu2g02675 211 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vimu2g02675 211 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Vimu2g02675 211 Coils Coil 87 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02675 Vimu-Chr2 23583171 23585088 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02675 1 176 Type I MADS-box Gene Family AT5G48670 45.652 1.29e-42 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vimu2g02675 SRF-TF 9.8e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02675 - - var:108319985 375.555