Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02615 ATGTCCTCCCACCGCGCGTTCCAGCTTAAACTTAATCCGTTAACAGGTAACTCTGAATGGATCGTCATTGAAGACAATGACGAGAGCTTCGCCCAGAATTTCCACAAGCCTTTCCTTGCCACGACGTCGTATTTGGACATGCTGAATGACTCCACCAGAAACGCGGCATTTCGCCAAGCCATTCAGAAAACCATCAGCAAACCTTGCCATGTCCTCGATATCGGTGCTGGAACTGGGTTGCTTTCGATGATGGCTGCACGTGCCATGGGTGACGAAGGGAAGGTCACAGCTTGTGAATCTTACCTTCCCATGGTGAAGCTGATGAAGAAGGTCTTGCGCCTTAATGGCATGGAGGGAAGAGTCAAAATCATCAACAAGCGCTCTGAGGAACTCCAAGTTGGTTTTGATATGCCTTCGCGAGCACATGTTCTTGTAAGCGAGATACTTGATTCAGAGCTACTGGGTGAGGGGCTTATACCGACCCTACAACATGCATATGACAATTTGTTGGTGGAAAATGCTATGACTGTGCCATATCGAGCAACTATATATGGACAGCTGGTTGAAAGCACATTCTTGTGGAAGTTGCATGATTTTCATAACAACGAGGCTACTGTATCTGATAGCATTCGGCTTACTCCTCCAGGACTTGATAGTGTGCTAGGTATCAAACGTCAGCAATATGCTATGCATGTCAATCCTTTACAGGAAGAAATAACACTGCTTTCAGAACCCTTCAAAATTTTTGAATTTGATTTTTGGAAACGGCCAGAGAGTTATGGAGAAACTGAGTTGTGTGTAAAGGCAACAAATGATGGGAGAGTTCATGTTGTGGTCTCTTGGTGGGTACTTCAACTTGATCAGGAAGGGACTATCTATTATTCCACTGCTCCAAGGTGGATAAGCTCACCGACAATTACAAGTCCTATTGGTTGGTGTGACCACTGGAAACAGTGTGTTTGGTTCGTTCCAGGCAGTGGTATTTCCATACTCCAAGGGGAAGAAATTCGTTTACTTGCTACTCATACTGAAACTAGTTTCTCATATAATTTTGATACCCTAGTACCAACTACTGAGATTTTGAACCATAGGTGCATGACAGGAGATTTTCAGCTTGTACTACCACCAGAAAGAGCTGCAATTTATGCAGATAAAGAATGGAGGCTTTCAATGTTGAAAGCAGTACAAAGCATGGGAAAAGATCGCCTGTTATGCTTGGTTGTAGATGATAGTGTCTTTTTACCACTTCTTGTAGCAAAGCTTTCGGAAGCAAGTGTAATGTCATTACTTCCTGGGTTGAGGGAAAGGGGCCTCCAATACCTGCAAGCAGTTGCCCATGCAAATGGTTTGTCACATGGTTGCATTGAAGTTCTTGAAAAAAACGTGCAACATGAGTCTTGCAATATAGTCTCTCCCAATGGCGAGGGAGAACCCGCCAGACATTGCGGTGGCGCTCATCATGGAGAATCCACTGGCAGCAACTCTTGCCGCAATGAGTGTCATGGCAGCACCTCTGCCAATGTAATCCCTCCAGCGACGAGCGAGAAGAAGCCGACAGACATTGCTACAGTTGATCTGTTAATAGCTGAACCTTTCTATGTAGGATACGATGATATGCTGCCATGGCAGAACCTACGATTTTGGAGGGATCGTACTGCACTTAATGATATACTCTCAGAAGATGCTCTGACAATTCCTAGTAAAGGAATATTGAGAGCTTGCGCTATGTCTCTTCCTGATCTTTGGAAAAGTCGTTGTTGCCTGAGTAGTATTGAAGGTTTTGACCATTCAGTGGTAAATGCTACATTGGGGGCCTGCGGTCATCTACCGGAACTTGAAGAGGGTCCCTGTCTCCCTTTTTTCGTCTGGCAGTGTGGAGAATTTGATGTGCTTAGTGAGACATTTGACGTGATGGAGTTTGATTTTTCAAAACAAATATGCGAATGTCAAGGAAAATCCCAGGTTAAGTTCACCAAGAGGGGGGTATGTCATGGATTTGTATTATGGATTGACTGGGTCATGGATTTACAAAATTCTATTGTGATTTCAACTGGTCCAGATAAGAAGTACTGGAAGCAGGGAGTTAAGCTTCTTGGGACACCTAGAACAGTAGACCCTCAAAGCTTGACAAGTGTCCAACCTTGTTCTGCAGTTAGAGAGAAGCACCCACGCGATCGAGAACCGCTTGACGGAGTTTCCACCGCCAGTTTCCAAAAGTGTGGCATTCAAAAGTTACCGGAAGACATTCCACTGCTGGTTTGCCGATTGGAACGTGCTCAGCCCCCGAAAAATTAG 2295 0.4488 MSSHRAFQLKLNPLTGNSEWIVIEDNDESFAQNFHKPFLATTSYLDMLNDSTRNAAFRQAIQKTISKPCHVLDIGAGTGLLSMMAARAMGDEGKVTACESYLPMVKLMKKVLRLNGMEGRVKIINKRSEELQVGFDMPSRAHVLVSEILDSELLGEGLIPTLQHAYDNLLVENAMTVPYRATIYGQLVESTFLWKLHDFHNNEATVSDSIRLTPPGLDSVLGIKRQQYAMHVNPLQEEITLLSEPFKIFEFDFWKRPESYGETELCVKATNDGRVHVVVSWWVLQLDQEGTIYYSTAPRWISSPTITSPIGWCDHWKQCVWFVPGSGISILQGEEIRLLATHTETSFSYNFDTLVPTTEILNHRCMTGDFQLVLPPERAAIYADKEWRLSMLKAVQSMGKDRLLCLVVDDSVFLPLLVAKLSEASVMSLLPGLRERGLQYLQAVAHANGLSHGCIEVLEKNVQHESCNIVSPNGEGEPARHCGGAHHGESTGSNSCRNECHGSTSANVIPPATSEKKPTDIATVDLLIAEPFYVGYDDMLPWQNLRFWRDRTALNDILSEDALTIPSKGILRACAMSLPDLWKSRCCLSSIEGFDHSVVNATLGACGHLPELEEGPCLPFFVWQCGEFDVLSETFDVMEFDFSKQICECQGKSQVKFTKRGVCHGFVLWIDWVMDLQNSIVISTGPDKKYWKQGVKLLGTPRTVDPQSLTSVQPCSAVREKHPRDREPLDGVSTASFQKCGIQKLPEDIPLLVCRLERAQPPKN 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02615 764 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 628 724 IPR025799 GO:0016274|GO:0018216
Vimu2g02615 764 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 517 715 IPR029063 -
Vimu2g02615 764 Gene3D Vaccinia Virus protein VP39 371 566 IPR029063 -
Vimu2g02615 764 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 23 352 IPR025799 GO:0016274|GO:0018216
Vimu2g02615 764 FunFam Protein arginine N-methyltransferase 1.6 570 725 - -
Vimu2g02615 764 FunFam Protein arginine N-methyltransferase 1.6 180 365 - -
Vimu2g02615 764 Gene3D - 180 365 - -
Vimu2g02615 764 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 44 366 IPR029063 -
Vimu2g02615 764 FunFam Protein arginine N-methyltransferase 37 179 - -
Vimu2g02615 764 Pfam Lysine methyltransferase 22 163 IPR019410 -
Vimu2g02615 764 Gene3D Vaccinia Virus protein VP39 38 179 IPR029063 -
Vimu2g02615 764 Gene3D - 570 720 - -
Vimu2g02615 764 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 358 722 IPR025799 GO:0016274|GO:0018216
Vimu2g02615 764 CDD AdoMet_MTases 71 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02615 Vimu-Chr2 22534919 22544343 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02615 22 184 C2H2 Transcription Factor Family AT3G12270 27.907 1.79e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02615 K11438 - gmx:100785846 1158.28