Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02613 ATGCTTCCTCTGCGTTCGCAATCACAGATTGGGGGACTACAAACATCACTGGCTCTTGTTTCTTCAGATCCTGTTCTGTCTCCTGATGAGCCAAGATCAAACTCTGACAATCTCCGTGAATCTCCGGCTGAAAGTGCAAGTTCTCAAGAAACATGGCCTACAGCTGATGCAGCTACAACAAAGAAGACGGAGAATGGAAAAGCAGAGATTAATTGCCTTGAGCAGAATGTGATTCACCGTGTTTCCAGTGCAGACAAAGTTACTCTTCAGGACATTGCCAGAGAAAGTGTCGGTACAATATGTGAAAAAATGCATCGTCTACCTGAGGAGTATCTAGAAGAGTTGAAAAATGGACTTCGAGTTATCCTTGATGGAGGGAATGGTTCACAGCATAGAGAAGAATTTTTCATTTTGCAGAAGTTTGTTCAGGGCAGAACTGATTTGACAGCCAAGACCCTGGTCAGAGCACATCGAGTGCAACTTGAAATCCTTGTTGCAATAAATACTGGAATTCAGGGATTTTTGCATCCTAGCATCAGTCTTTCACAGAATTCCCTCATTGAGATCTTTGGCTATAAGAGATGCAGAAACATAGCGTGCCAAAATCAGCTTCCAGCTGATGATTGTACCTGTGAAATATGCAACGGCACTAATGGTTTCTGCAATCTTTGCATGTGTGTGATCTGCAACAAGTTTGACTTTGAGGTGAATACTTGCCGCTGGATTGGATGTGATTTGTGTTCTCATTGGACTCACACAGATTGTGCCATCCGTCAGCAACTTATTTGCATTGGCCCTTCTTCAAAGAGCGGGGCGGGACCAACTGAAATGGTTTTCCGGTGTCAAGCTTGCAATAGGACTTCAGAACTGTTGGGTTGGGTTAAAGATGTTTTCCAGCACTGTGCACCTTCATGGGATGGAGAGGCCTTAATGAGGGAACTTGATTATGTTAGCAGGATCTTTCACGGGAGTAAAGACCCTCGAGGGAGGAAGTTGTTTTGGAAGTGTGATGATCTGAAGGAAAAATTGAAAACTAAAAAAGTAGATTCAAAGGCTGCTTGCAGGGCAATTTTGATGTTTTTCCAAGAGCTTGAGGTAGACTCTCCAAAAGGCTTGGAAAATGGAGAAAATGGAAGGTTGATTGCTCCACAAGATGCATGTAATAGAATTGCTGAAGTAGTGCAGGAGGCTATAAGAAAGATGGAAATAGTAGCTGATGAGAAGATGAGGATGTTCAAGAAGGCTCGCATGGCCCTCGAAGCTTGCGATCGTGAATTAGCTGACAAATCCAGGGAAGTGGCAGAGCTCAAGATGGAGAGACAAAAAAGGAAGCTGCAGATAGAAGAGTTGGAGAAAATTGTGAGGCTAAAAAATGCGGAGGCTGATATGTTCCAATTGAAGGCTAATGAGGCTAAACGAGAGGCTGAGAGGCTCCAGAGGATTTCTCTTGCCAAGCAAGATAAATCAGAGGAAGAATTTACTAGCAACTACCTGAAACAACGATTAAACGAAGCCGAGGCTGAGAAACAGTATCTTTACGAGAAGATCAAATTGCAGGAGAGTTCTCGTGCTTCACAGAGCAATAGTGGTGGTGACCCCTCTCAGATGCTGATGTATTCCAAAATCCATGATCTGTTGTACAATGCTCCTCCCAAACCAGACACTCAGGGCCACACTTTTCGGACAAATCCCTGA 1695 0.4383 MLPLRSQSQIGGLQTSLALVSSDPVLSPDEPRSNSDNLRESPAESASSQETWPTADAATTKKTENGKAEINCLEQNVIHRVSSADKVTLQDIARESVGTICEKMHRLPEEYLEELKNGLRVILDGGNGSQHREEFFILQKFVQGRTDLTAKTLVRAHRVQLEILVAINTGIQGFLHPSISLSQNSLIEIFGYKRCRNIACQNQLPADDCTCEICNGTNGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRQQLICIGPSSKSGAGPTEMVFRCQACNRTSELLGWVKDVFQHCAPSWDGEALMRELDYVSRIFHGSKDPRGRKLFWKCDDLKEKLKTKKVDSKAACRAILMFFQELEVDSPKGLENGENGRLIAPQDACNRIAEVVQEAIRKMEIVADEKMRMFKKARMALEACDRELADKSREVAELKMERQKRKLQIEELEKIVRLKNAEADMFQLKANEAKREAERLQRISLAKQDKSEEEFTSNYLKQRLNEAEAEKQYLYEKIKLQESSRASQSNSGGDPSQMLMYSKIHDLLYNAPPKPDTQGHTFRTNP 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02613 564 Pfam Coiled-coil region of Oberon 413 546 IPR032535 -
Vimu2g02613 564 MobiDBLite consensus disorder prediction 1 63 - -
Vimu2g02613 564 Coils Coil 456 488 - -
Vimu2g02613 564 PIRSF UCP025218 2 552 - -
Vimu2g02613 564 MobiDBLite consensus disorder prediction 519 564 - -
Vimu2g02613 564 SMART PHD_3 225 285 IPR001965 -
Vimu2g02613 564 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 487 509 IPR004082 -
Vimu2g02613 564 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 160 175 IPR004082 -
Vimu2g02613 564 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 145 160 IPR004082 -
Vimu2g02613 564 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 305 324 IPR004082 -
Vimu2g02613 564 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 448 468 IPR004082 -
Vimu2g02613 564 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 103 125 IPR004082 -
Vimu2g02613 564 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 186 207 IPR004082 -
Vimu2g02613 564 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 232 252 IPR004082 -
Vimu2g02613 564 Pfam PHD - plant homeodomain finger protein 195 318 IPR032881 -
Vimu2g02613 564 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 27 548 IPR004082 -
Vimu2g02613 564 Coils Coil 419 453 - -
Vimu2g02613 564 MobiDBLite consensus disorder prediction 519 535 - -
Vimu2g02613 564 CDD PHD_OBE1_like 225 284 IPR047578 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02613 Vimu-Chr2 22528419 22530589 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02613 195 297 PHD Gene Family AT5G57380 33.654 3.81e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02613 - - vum:124846085 1131.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02613 2 22528419 22530589 Vimu2g02613 2 22528419 22530589 ECH