Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02605 ATGTCGACAGTGCATCATTACTACAATGTGATGAGGGTGAATGATGAACACACCACCGTTCTGCCGGGTGATTATTTCAACTTCGAAGTCAAAGTCAGATTCCACTCAGCGGATACATTCCCAGCCGGATTACAGCATCATTTTTCTCCAGCATCAATACCCGCCCAAGATTTCTTCCAAGAGGGTCCAACTTTCTTACACACAGTGTTGTCACTTTCACCCTTCACCATAGAATGCGTGGATGAAATCGCAGAAGGGGTTCTTTCTAATGTTCAATCCTTGTTTCGAGTTGATAGCCTTTCTTCTTTTATTTCTCTGGAACCCCAGGAATCTCAACACCGAGTCATCCCGTTAACTGTGACTGTTATAATATTGAATGTTGTAGAGCGTGCAGCTAGTGAAGAGTTCACGCAGAGGTCTAGAAGGAGTCAGAGGGTGAGTTTAAGAAGGAGTGAGAGGCTGGGTACAAGAAGGAGTGAGAGGCTGAGTGCGAGAGCGAGTCAGAGGCAAAGTTCTAGACTGAATCAGAGGCAGAGTTCTGAGGTGAATTATGGTTCCGATGATGAAATCCTAATAAATAGATTTTTGAAGAAGTGTACTGTTATTAGAGAATGTGAAGATTGTTGTATCTGCTTGGAAGAGATGAATGTGAATGCTGAGTGCTACAAGTTGTCATGCCAACATATCTTTCATCTTCCATGTATTCTCACATGGCTCAAAACCAGTCATGTATGTCCTTTGTGCCGTCACTCTTTGCCAACAGGTGAAAACTAG 774 0.4328 MSTVHHYYNVMRVNDEHTTVLPGDYFNFEVKVRFHSADTFPAGLQHHFSPASIPAQDFFQEGPTFLHTVLSLSPFTIECVDEIAEGVLSNVQSLFRVDSLSSFISLEPQESQHRVIPLTVTVIILNVVERAASEEFTQRSRRSQRVSLRRSERLGTRRSERLSARASQRQSSRLNQRQSSEVNYGSDDEILINRFLKKCTVIRECEDCCICLEEMNVNAECYKLSCQHIFHLPCILTWLKTSHVCPLCRHSLPTGEN 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02605 257 Pfam Ring finger domain 207 249 IPR001841 -
Vimu2g02605 257 SUPERFAMILY RING/U-box 207 253 - -
Vimu2g02605 257 MobiDBLite consensus disorder prediction 147 164 - -
Vimu2g02605 257 MobiDBLite consensus disorder prediction 147 181 - -
Vimu2g02605 257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 255 IPR013083 -
Vimu2g02605 257 SMART ring_2 208 248 IPR001841 -
Vimu2g02605 257 ProSiteProfiles Zinc finger RING-type profile. 208 249 IPR001841 -
Vimu2g02605 257 PANTHER TARGET OF ERK KINASE MPK-1 124 254 - -
Vimu2g02605 257 CDD RING-H2_PA-TM-RING 207 249 - -
Vimu2g02605 257 MobiDBLite consensus disorder prediction 165 181 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02605 163 253 C3H Transcription Factor Family AT1G18760 37.363 2.26e-12 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02605 - - var:108320046 458.759