Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02552 ATGACTAATATCATGGTTAATGAAGATGACAACAACATCCATGAGTTAAATTCAGAAGAGTGGATGAAGATGATAGAAAACACGCTCAATGAAGAAAAAGATCCATTGAGTGTAGGTGATATTTTAGGAGAAGTTTATCATGAATTATCCAAACTTTCACCTTCTCAGGTATTTTATATTCATCATTTTTCCCTATTTTGGATTTTAGGTTTCAACCATATTTTTCTATTACATGCTCCTACGAGTATGAATCCCTCATTAGATCATTCACCAGATTCAGTGACATTAGTTGCAAATCATATTCAAAGTTATGGGGAAAATCTTTTTGTTGATATTCATGATCAAGGTGTTGCTTTTGCTTATAGTCATGCTCCAACTCCTTCTGGTGTTGTTCCTGCCACTAATAATACTCAGCTTCCTTCCCCTCATAACATTACTTTATCCCATCACGCTGAGTCTGATTGGGTTCAAATGTCCAACAACTCAAATCACTTATATTCTTACAAATTGAAGTCACATCACAAACGATATGAGCGTTGGACAGAAGATGAACACAGACTATTTCTTCTTGGACTTATAGCTTGTGGCGAAGGAGATTGGAAAGGTATTTCAGAATTATACGTTGTATCAAAGTCTCCATCTCAAGTAGCAAGTCATGCTCAAAAATACAAGATTCATCAAAAGGCCTCAACAAAAAATAAGAAGAGAAAAAGTATTCATGAGGTTTCTATTGAGCCTTCTAAACATGCTCTTCCTACTTATATCATGTCGTTGGATGAAACATCATCCAAAGATGATGTGTTGAACTGTGCAAATCACATGGAAAGTTGCAATAATTCAATTGTCGCAGTTCCTCGTAAGAAATGGAAGCATTGGACTGAAGATGAACACAAATTATTTGTCCTCGGATATGCCAAATATCAAGAAAACTGGAAAGAAGTTTCAAAAAATTTTGTCCCCTCAAAAACTCCAACCCAAATTGCAAGTCATGCTCAAAAATACTTCCTTCGTCAAAACATCTCAGAGAACAACAGAAAAAGGAAGAGCATTCATGACATCACGTTGTAG 1068 0.3549 MTNIMVNEDDNNIHELNSEEWMKMIENTLNEEKDPLSVGDILGEVYHELSKLSPSQVFYIHHFSLFWILGFNHIFLLHAPTSMNPSLDHSPDSVTLVANHIQSYGENLFVDIHDQGVAFAYSHAPTPSGVVPATNNTQLPSPHNITLSHHAESDWVQMSNNSNHLYSYKLKSHHKRYERWTEDEHRLFLLGLIACGEGDWKGISELYVVSKSPSQVASHAQKYKIHQKASTKNKKRKSIHEVSIEPSKHALPTYIMSLDETSSKDDVLNCANHMESCNNSIVAVPRKKWKHWTEDEHKLFVLGYAKYQENWKEVSKNFVPSKTPTQIASHAQKYFLRQNISENNRKRKSIHDITL 355
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02552 355 SMART sant 288 337 IPR001005 -
Vimu2g02552 355 SMART sant 176 226 IPR001005 -
Vimu2g02552 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 172 228 IPR017930 -
Vimu2g02552 355 NCBIfam myb-like DNA-binding domain, SHAQKYF class 288 338 IPR006447 GO:0003677
Vimu2g02552 355 NCBIfam myb-like DNA-binding domain, SHAQKYF class 175 227 IPR006447 GO:0003677
Vimu2g02552 355 ProSiteProfiles SANT domain profile. 178 228 IPR017884 -
Vimu2g02552 355 SUPERFAMILY Homeodomain-like 285 339 IPR009057 -
Vimu2g02552 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 285 339 IPR017930 -
Vimu2g02552 355 PANTHER TRANSCRIPTION FACTOR KUA1 245 354 - -
Vimu2g02552 355 Pfam Myb-like DNA-binding domain 291 335 IPR001005 -
Vimu2g02552 355 Pfam Myb-like DNA-binding domain 179 224 IPR001005 -
Vimu2g02552 355 CDD SANT 179 224 IPR001005 -
Vimu2g02552 355 SUPERFAMILY Homeodomain-like 174 228 IPR009057 -
Vimu2g02552 355 ProSiteProfiles Myb-like domain profile. 284 335 IPR001005 -
Vimu2g02552 355 Gene3D - 291 339 - -
Vimu2g02552 355 ProSiteProfiles SANT domain profile. 292 339 IPR017884 -
Vimu2g02552 355 CDD SANT 292 335 IPR001005 -
Vimu2g02552 355 Gene3D - 177 229 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vimu2g02552 Vimu-Chr2 21722786 21724596 Dispersed/Tandem
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu2g02552 Myb_DNA-binding 3.1e-08 CL0123
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02552 - - vra:106754347 344.354