Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vimu2g02552 | ATGACTAATATCATGGTTAATGAAGATGACAACAACATCCATGAGTTAAATTCAGAAGAGTGGATGAAGATGATAGAAAACACGCTCAATGAAGAAAAAGATCCATTGAGTGTAGGTGATATTTTAGGAGAAGTTTATCATGAATTATCCAAACTTTCACCTTCTCAGGTATTTTATATTCATCATTTTTCCCTATTTTGGATTTTAGGTTTCAACCATATTTTTCTATTACATGCTCCTACGAGTATGAATCCCTCATTAGATCATTCACCAGATTCAGTGACATTAGTTGCAAATCATATTCAAAGTTATGGGGAAAATCTTTTTGTTGATATTCATGATCAAGGTGTTGCTTTTGCTTATAGTCATGCTCCAACTCCTTCTGGTGTTGTTCCTGCCACTAATAATACTCAGCTTCCTTCCCCTCATAACATTACTTTATCCCATCACGCTGAGTCTGATTGGGTTCAAATGTCCAACAACTCAAATCACTTATATTCTTACAAATTGAAGTCACATCACAAACGATATGAGCGTTGGACAGAAGATGAACACAGACTATTTCTTCTTGGACTTATAGCTTGTGGCGAAGGAGATTGGAAAGGTATTTCAGAATTATACGTTGTATCAAAGTCTCCATCTCAAGTAGCAAGTCATGCTCAAAAATACAAGATTCATCAAAAGGCCTCAACAAAAAATAAGAAGAGAAAAAGTATTCATGAGGTTTCTATTGAGCCTTCTAAACATGCTCTTCCTACTTATATCATGTCGTTGGATGAAACATCATCCAAAGATGATGTGTTGAACTGTGCAAATCACATGGAAAGTTGCAATAATTCAATTGTCGCAGTTCCTCGTAAGAAATGGAAGCATTGGACTGAAGATGAACACAAATTATTTGTCCTCGGATATGCCAAATATCAAGAAAACTGGAAAGAAGTTTCAAAAAATTTTGTCCCCTCAAAAACTCCAACCCAAATTGCAAGTCATGCTCAAAAATACTTCCTTCGTCAAAACATCTCAGAGAACAACAGAAAAAGGAAGAGCATTCATGACATCACGTTGTAG | 1068 | 0.3549 | MTNIMVNEDDNNIHELNSEEWMKMIENTLNEEKDPLSVGDILGEVYHELSKLSPSQVFYIHHFSLFWILGFNHIFLLHAPTSMNPSLDHSPDSVTLVANHIQSYGENLFVDIHDQGVAFAYSHAPTPSGVVPATNNTQLPSPHNITLSHHAESDWVQMSNNSNHLYSYKLKSHHKRYERWTEDEHRLFLLGLIACGEGDWKGISELYVVSKSPSQVASHAQKYKIHQKASTKNKKRKSIHEVSIEPSKHALPTYIMSLDETSSKDDVLNCANHMESCNNSIVAVPRKKWKHWTEDEHKLFVLGYAKYQENWKEVSKNFVPSKTPTQIASHAQKYFLRQNISENNRKRKSIHDITL | 355 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vimu2g02552 | 355 | SMART | sant | 288 | 337 | IPR001005 | - | |
Vimu2g02552 | 355 | SMART | sant | 176 | 226 | IPR001005 | - | |
Vimu2g02552 | 355 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 172 | 228 | IPR017930 | - | |
Vimu2g02552 | 355 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 288 | 338 | IPR006447 | GO:0003677 | |
Vimu2g02552 | 355 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 175 | 227 | IPR006447 | GO:0003677 | |
Vimu2g02552 | 355 | ProSiteProfiles | SANT domain profile. | 178 | 228 | IPR017884 | - | |
Vimu2g02552 | 355 | SUPERFAMILY | Homeodomain-like | 285 | 339 | IPR009057 | - | |
Vimu2g02552 | 355 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 285 | 339 | IPR017930 | - | |
Vimu2g02552 | 355 | PANTHER | TRANSCRIPTION FACTOR KUA1 | 245 | 354 | - | - | |
Vimu2g02552 | 355 | Pfam | Myb-like DNA-binding domain | 291 | 335 | IPR001005 | - | |
Vimu2g02552 | 355 | Pfam | Myb-like DNA-binding domain | 179 | 224 | IPR001005 | - | |
Vimu2g02552 | 355 | CDD | SANT | 179 | 224 | IPR001005 | - | |
Vimu2g02552 | 355 | SUPERFAMILY | Homeodomain-like | 174 | 228 | IPR009057 | - | |
Vimu2g02552 | 355 | ProSiteProfiles | Myb-like domain profile. | 284 | 335 | IPR001005 | - | |
Vimu2g02552 | 355 | Gene3D | - | 291 | 339 | - | - | |
Vimu2g02552 | 355 | ProSiteProfiles | SANT domain profile. | 292 | 339 | IPR017884 | - | |
Vimu2g02552 | 355 | CDD | SANT | 292 | 335 | IPR001005 | - | |
Vimu2g02552 | 355 | Gene3D | - | 177 | 229 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vimu2g02552 | Vimu-Chr2 | 21722786 | 21724596 | Dispersed/Tandem |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MYB | Vimu2g02552 | Myb_DNA-binding | 3.1e-08 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vimu2g02552 | - | - | vra:106754347 | 344.354 |