LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu2g02552	ATGACTAATATCATGGTTAATGAAGATGACAACAACATCCATGAGTTAAATTCAGAAGAGTGGATGAAGATGATAGAAAACACGCTCAATGAAGAAAAAGATCCATTGAGTGTAGGTGATATTTTAGGAGAAGTTTATCATGAATTATCCAAACTTTCACCTTCTCAGGTATTTTATATTCATCATTTTTCCCTATTTTGGATTTTAGGTTTCAACCATATTTTTCTATTACATGCTCCTACGAGTATGAATCCCTCATTAGATCATTCACCAGATTCAGTGACATTAGTTGCAAATCATATTCAAAGTTATGGGGAAAATCTTTTTGTTGATATTCATGATCAAGGTGTTGCTTTTGCTTATAGTCATGCTCCAACTCCTTCTGGTGTTGTTCCTGCCACTAATAATACTCAGCTTCCTTCCCCTCATAACATTACTTTATCCCATCACGCTGAGTCTGATTGGGTTCAAATGTCCAACAACTCAAATCACTTATATTCTTACAAATTGAAGTCACATCACAAACGATATGAGCGTTGGACAGAAGATGAACACAGACTATTTCTTCTTGGACTTATAGCTTGTGGCGAAGGAGATTGGAAAGGTATTTCAGAATTATACGTTGTATCAAAGTCTCCATCTCAAGTAGCAAGTCATGCTCAAAAATACAAGATTCATCAAAAGGCCTCAACAAAAAATAAGAAGAGAAAAAGTATTCATGAGGTTTCTATTGAGCCTTCTAAACATGCTCTTCCTACTTATATCATGTCGTTGGATGAAACATCATCCAAAGATGATGTGTTGAACTGTGCAAATCACATGGAAAGTTGCAATAATTCAATTGTCGCAGTTCCTCGTAAGAAATGGAAGCATTGGACTGAAGATGAACACAAATTATTTGTCCTCGGATATGCCAAATATCAAGAAAACTGGAAAGAAGTTTCAAAAAATTTTGTCCCCTCAAAAACTCCAACCCAAATTGCAAGTCATGCTCAAAAATACTTCCTTCGTCAAAACATCTCAGAGAACAACAGAAAAAGGAAGAGCATTCATGACATCACGTTGTAG	1068	0.3549	MTNIMVNEDDNNIHELNSEEWMKMIENTLNEEKDPLSVGDILGEVYHELSKLSPSQVFYIHHFSLFWILGFNHIFLLHAPTSMNPSLDHSPDSVTLVANHIQSYGENLFVDIHDQGVAFAYSHAPTPSGVVPATNNTQLPSPHNITLSHHAESDWVQMSNNSNHLYSYKLKSHHKRYERWTEDEHRLFLLGLIACGEGDWKGISELYVVSKSPSQVASHAQKYKIHQKASTKNKKRKSIHEVSIEPSKHALPTYIMSLDETSSKDDVLNCANHMESCNNSIVAVPRKKWKHWTEDEHKLFVLGYAKYQENWKEVSKNFVPSKTPTQIASHAQKYFLRQNISENNRKRKSIHDITL	355

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu2g02552	355	SMART	sant	288	337	IPR001005	-
	Vimu2g02552	355	SMART	sant	176	226	IPR001005	-
	Vimu2g02552	355	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	172	228	IPR017930	-
	Vimu2g02552	355	NCBIfam	myb-like DNA-binding domain, SHAQKYF class	288	338	IPR006447	GO:0003677
	Vimu2g02552	355	NCBIfam	myb-like DNA-binding domain, SHAQKYF class	175	227	IPR006447	GO:0003677
	Vimu2g02552	355	ProSiteProfiles	SANT domain profile.	178	228	IPR017884	-
	Vimu2g02552	355	SUPERFAMILY	Homeodomain-like	285	339	IPR009057	-
	Vimu2g02552	355	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	285	339	IPR017930	-
	Vimu2g02552	355	PANTHER	TRANSCRIPTION FACTOR KUA1	245	354	-	-
	Vimu2g02552	355	Pfam	Myb-like DNA-binding domain	291	335	IPR001005	-
	Vimu2g02552	355	Pfam	Myb-like DNA-binding domain	179	224	IPR001005	-
	Vimu2g02552	355	CDD	SANT	179	224	IPR001005	-
	Vimu2g02552	355	SUPERFAMILY	Homeodomain-like	174	228	IPR009057	-
	Vimu2g02552	355	ProSiteProfiles	Myb-like domain profile.	284	335	IPR001005	-
	Vimu2g02552	355	Gene3D	-	291	339	-	-
	Vimu2g02552	355	ProSiteProfiles	SANT domain profile.	292	339	IPR017884	-
	Vimu2g02552	355	CDD	SANT	292	335	IPR001005	-
	Vimu2g02552	355	Gene3D	-	177	229	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu2g02552	Vimu-Chr2	21722786	21724596	Dispersed/Tandem

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Vimu2g02552		Myb_DNA-binding	3.1e-08	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu2g02552	-		-	vra:106754347	344.354