Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02545 ATGTCTAATATCATGGTTAATGAAGATGACAACAACATCTATGAGTTAAACTCAGAAGAGTGGATGAAGATGATAGAAAACACACTGAATGAAGAAGAAGATCCATTGAGTATAGGTGATATTTTAGGAGAAGTTTATCATGAATTATCCAAACTTTCACCTTCTCAGGTATTTTATATTCATCATTTCTCCCTATTTTGGATTTTAGGTTTCAACCATATTTCTCTATTACATGCTCCTGCGAGTATGAATCCTTCATTAGATCTTTCACCAGATCCAGTGGCATTAGTTGAAAATAATATTCAAAGTTTTGGTGAAAACCTTTTTGTTGGTGTTCATGATCAAGGTGTTGCTTTTGCTTATAATCATGCTCCAACTCCTTCCAATGTTGTTCCTGCCACAACTAATACTCAGCTTCCTTTCCCTCATAACATTACTCTATCGAATCACGTTACGTCTGATTGGGTTCAAATGTCCAACAACTCAAATCACTTATATTCTTACAAATTAAAGTCACATCACAAACGATATGAGCGTTGGACAAAAGATGAACACAGACTATTTCTTCTTGGACTTATAACTTGTGGCGAAGGAGATTGGAAAGGCATTTCAGAATTATACGTTGTATCAAAGTCTCCATCTCAAGTAGCAAGTCATGCTCAAAAATACAAGATTCATCAAAATGCCTCAACTAAAAATAAGAAGAGAAAAAGTATTCACGAGGTTTCTATTGAGCCTTCTAAACATGCTCTTCCTGCTTATATCATGTCGTTGGACGAAACATCATTCAAAGATGATGTGTTGAACTTTGCAAATCACATGGAAAGCTGCAATAAGTCTATTGTCGCAGTTCCTCATAAGAAATGGAAGCATTGGACTGAAGATGAACACAAATGTTCTATTGTTTGTTTTGACTCTTATCTAACAGGTTATTTGTCCTCGGACATGCCAAATATCAAGAAAACTGGAAAGAAGTTTCAAAAAATTTTGTCCCCTCAAAAACTCCAACCCAAATTGCAAGTCATGCTCAAAAATACTTCATTCGTCAAAACACCGCAGAGAACAAAAAAAAAAAGGAAGAGCATTCATGACATAACATTACAGGACATTGCCACTGTTGTAGCTCCTTCTTACATTTGA 1140 0.3526 MSNIMVNEDDNNIYELNSEEWMKMIENTLNEEEDPLSIGDILGEVYHELSKLSPSQVFYIHHFSLFWILGFNHISLLHAPASMNPSLDLSPDPVALVENNIQSFGENLFVGVHDQGVAFAYNHAPTPSNVVPATTNTQLPFPHNITLSNHVTSDWVQMSNNSNHLYSYKLKSHHKRYERWTKDEHRLFLLGLITCGEGDWKGISELYVVSKSPSQVASHAQKYKIHQNASTKNKKRKSIHEVSIEPSKHALPAYIMSLDETSFKDDVLNFANHMESCNKSIVAVPHKKWKHWTEDEHKCSIVCFDSYLTGYLSSDMPNIKKTGKKFQKILSPQKLQPKLQVMLKNTSFVKTPQRTKKKRKSIHDITLQDIATVVAPSYI 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02545 379 SUPERFAMILY Homeodomain-like 174 228 IPR009057 -
Vimu2g02545 379 CDD SANT 179 224 IPR001005 -
Vimu2g02545 379 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 140 249 IPR043363 -
Vimu2g02545 379 SMART sant 176 226 IPR001005 -
Vimu2g02545 379 NCBIfam myb-like DNA-binding domain, SHAQKYF class 175 227 IPR006447 GO:0003677
Vimu2g02545 379 ProSiteProfiles SANT domain profile. 178 228 IPR017884 -
Vimu2g02545 379 Gene3D - 177 229 - -
Vimu2g02545 379 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 172 228 IPR017930 -
Vimu2g02545 379 Pfam Myb-like DNA-binding domain 179 224 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02545 Vimu-Chr2 21608130 21609938 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu2g02545 Myb_DNA-binding 4.9e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02545 - - vra:106754347 312.383