Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02542 ATGGGCTGTTGCTTAACTAAAGATTCAGAACCAGAACGAAATGGTTACAGACATGCTGCGACAGGTGGTGTGCACACCCAAAAGACTCACGAACCTTTGGTCAACCAATCAAGAGTACCTGCAAATCAACCATATCATATACAGGAAAAGCATACTGCATCCACTGCTCAGACAGTGCCTCAGATGCCATGGAAGCCTTCTGGTCCTGCCCCCAGTCCTAAACCTGTGGCTAGTGTTAAGCAAGACACAATTCTAGGGAAGCAATTTGAAGATGTGAAGCAGTTCTACACACTTGGAAAAGAATTGGGTAGAGGGCAATTTGGGGTGACATATCTTTGCACTGAGAATTCAACTGGGATTCAGTATGCCTGCAAGTCTATTTCTAAGAGAAAACTTGTGAGTAAATCTGATAAGGAGGATATAAAGAGGGAGATTCAGATTATGCAGCATTTGAGTGGGCAACCCAACATTGTTGAGTTCAAAGGGGCTTATGAGGATAGGCAATCAGTTCATGTTGTGATGGAGCTGTGTGCTGGTGGGGAACTTTTTGATAGGATTATCGCCAAGGGGCATTACAGTGAGAGGGCTGCTGCTTCAATATGCAGACAAATTGTAAATGTAGTTCATATATGCCATTTCATGGGTGTGATGCATAGGGATCTGAAGCCAGAGAATTTCTTGTTATCTAGTAGGGATGAAAATGCACTACTCAAGGCAACAGATTTTGGTTTATCCGTTTTCATTGAAGAAGGAAAGGTATATCGGGATATAGTTGGTAGTGCTTACTATGTTGCTCCTGAAGTTCTGCGGCGCAGATGTGGGAAAGAAATAGATATATGGAGTGCAGGAGTCATATTATATATCTTACTTAGTGGAGTCCCTCCATTTTGGGCTGAGTCTGAGAAGGGAATATTTGATGCCATACTGGAAGGTCATATTGATTTTGAAAGTCAACCATGGCCAAACATTTCAAACAGTGCCAAGGATCTGGTTCGTAAGATGCTTATACAGGATCCAAAGAAACGTATTACCTCTGCTCAAGTTCTTGGTATGCACCCATGGATTAAAGATGGAAATGCTCCAGACAAGCCAATAGACAGTGCAGTCCTTTCTAGAATGAAGCAATTCAGAGCAATGAATAAACTAAAGAAACTTGCCCTCAAGGTCATTGCTGAGAATATGTCTGCAGAAGAGATCCAAGGTTTGAAGGCAATGTTTACAAATATGGACACTGACAAGAGTGGTACAATCACCTATGAAGAACTAAAGGCAGGATTGCAAAGACTTGGCTCAAAGCTTACAGAGGCTGAAGTGAAACAGCTTATGGATGCTGCTGACGTAGATGGAAATGGCTCAATCGACTACATAGAGTTCATCACTGCTACTATGCATAGACACAAGTTAGAAAGGGATGACCAACTCTTCAAGGCCTTCCAATATTTTGATAAAGACAACAGTGGGTATATTACAAGAGATGAGCTGGAATCAGCCATGAAAGAATATGGTATGGGTGATGATGCCACAATCAAGGAAATCATATCTGAAGTTGATACTATTATCTCTGAAGTGGATACAGATCATGATGGTAGAATCAACTATGAAGAATTCTCTGCAATGATGAAGAGTGGAAACCAACAAGGCAAACTATTCTAA 1653 0.4144 MGCCLTKDSEPERNGYRHAATGGVHTQKTHEPLVNQSRVPANQPYHIQEKHTASTAQTVPQMPWKPSGPAPSPKPVASVKQDTILGKQFEDVKQFYTLGKELGRGQFGVTYLCTENSTGIQYACKSISKRKLVSKSDKEDIKREIQIMQHLSGQPNIVEFKGAYEDRQSVHVVMELCAGGELFDRIIAKGHYSERAAASICRQIVNVVHICHFMGVMHRDLKPENFLLSSRDENALLKATDFGLSVFIEEGKVYRDIVGSAYYVAPEVLRRRCGKEIDIWSAGVILYILLSGVPPFWAESEKGIFDAILEGHIDFESQPWPNISNSAKDLVRKMLIQDPKKRITSAQVLGMHPWIKDGNAPDKPIDSAVLSRMKQFRAMNKLKKLALKVIAENMSAEEIQGLKAMFTNMDTDKSGTITYEELKAGLQRLGSKLTEAEVKQLMDAADVDGNGSIDYIEFITATMHRHKLERDDQLFKAFQYFDKDNSGYITRDELESAMKEYGMGDDATIKEIISEVDTIISEVDTDHDGRINYEEFSAMMKSGNQQGKLF 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02542 550 SUPERFAMILY Protein kinase-like (PK-like) 95 375 IPR011009 -
Vimu2g02542 550 SMART serkin_6 96 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g02542 550 ProSitePatterns EF-hand calcium-binding domain. 524 536 IPR018247 -
Vimu2g02542 550 ProSiteProfiles EF-hand calcium-binding domain profile. 397 432 IPR002048 GO:0005509
Vimu2g02542 550 ProSiteProfiles Protein kinase domain profile. 96 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g02542 550 ProSiteProfiles EF-hand calcium-binding domain profile. 469 504 IPR002048 GO:0005509
Vimu2g02542 550 Gene3D Transferase(Phosphotransferase) domain 1 182 361 - -
Vimu2g02542 550 FunFam Calcium-dependent protein kinase 1 98 181 - -
Vimu2g02542 550 CDD STKc_CAMK 95 354 - -
Vimu2g02542 550 ProSitePatterns EF-hand calcium-binding domain. 410 422 IPR018247 -
Vimu2g02542 550 ProSiteProfiles EF-hand calcium-binding domain profile. 433 468 IPR002048 GO:0005509
Vimu2g02542 550 Coils Coil 419 439 - -
Vimu2g02542 550 FunFam calcium-dependent protein kinase 1 182 361 - -
Vimu2g02542 550 ProSitePatterns EF-hand calcium-binding domain. 482 494 IPR018247 -
Vimu2g02542 550 MobiDBLite consensus disorder prediction 28 62 - -
Vimu2g02542 550 Gene3D Phosphorylase Kinase; domain 1 98 181 - -
Vimu2g02542 550 SUPERFAMILY EF-hand 378 542 IPR011992 -
Vimu2g02542 550 ProSitePatterns Protein kinases ATP-binding region signature. 102 125 IPR017441 GO:0005524
Vimu2g02542 550 ProSitePatterns EF-hand calcium-binding domain. 446 458 IPR018247 -
Vimu2g02542 550 Gene3D - 362 546 - -
Vimu2g02542 550 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672|GO:0006468
Vimu2g02542 550 PANTHER SERINE/THREONINE-PROTEIN KINASE 89 536 - -
Vimu2g02542 550 MobiDBLite consensus disorder prediction 1 77 - -
Vimu2g02542 550 CDD EFh 402 461 IPR002048 GO:0005509
Vimu2g02542 550 FunFam Calcium-dependent protein kinase 1 362 544 - -
Vimu2g02542 550 SMART efh_1 515 543 IPR002048 GO:0005509
Vimu2g02542 550 SMART efh_1 437 465 IPR002048 GO:0005509
Vimu2g02542 550 SMART efh_1 401 429 IPR002048 GO:0005509
Vimu2g02542 550 SMART efh_1 473 501 IPR002048 GO:0005509
Vimu2g02542 550 ProSiteProfiles EF-hand calcium-binding domain profile. 511 546 IPR002048 GO:0005509
Vimu2g02542 550 Pfam EF-hand domain pair 472 541 IPR002048 GO:0005509
Vimu2g02542 550 Pfam EF-hand domain pair 402 462 IPR002048 GO:0005509
Vimu2g02542 550 CDD EFh 473 541 IPR002048 GO:0005509
Vimu2g02542 550 Pfam Protein kinase domain 96 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02542 Vimu-Chr2 21480427 21486413 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02542 75 550 EF-hand Containing Proteins AT3G20410 81.250 0.0 814
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vimu2g02542 Pkinase 4.1e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02542 K13412 - gmx:547888 1043.49