Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02541 CGTCCAAAAACTAGTGGCCCTCACACACTTGCACCGCCTCTCCCACGCTCTGCTATATATATGCGTAAGCCCTTCACGTTCTTCATTCATAGTATTCTTGTGAAGGTTTGTTCCTCAAGTTTCTCGAACCGTCTTCTCTCTTTCATCAAGGTTGTTGTGTTTAGTTTATCGAATCATAGACGTTTTGTTCGCAACTTTCTAGGTGTTTTAAGTTTGAATAAAGAAAAGTACATGGTTGAGTTGGAAATCCAAGTTCCCACCCCATTTGACCCATTTGCTGAGGCTAGAGAATCGGATGCTCCAGGAGCGAAGGAGTATGTGCATATTCGGATCCAGCAGAGGAATGGAAAGAAGAGTCTGACCACAGTGCAGGGGCTGAAGAAGGAGTTTAGCTACGAGAAGATTCTCAAAGACCTCAAGAAAGAGTTTTGCTGCAACGGCAATGTGGTGCAGGACAAGGAGCTTGGCAAGATAATTCAGCTCCAAGGTGATCAGCGCAAGAACGTCTCACACTTCTTGATCCAGGCAGGCCTTGTCAGAAAGGACCAGATCAAGATTCATGGTTTTTGA 570 0.4509 RPKTSGPHTLAPPLPRSAIYMRKPFTFFIHSILVKVCSSSFSNRLLSFIKVVVFSLSNHRRFVRNFLGVLSLNKEKYMVELEIQVPTPFDPFAEARESDAPGAKEYVHIRIQQRNGKKSLTTVQGLKKEFSYEKILKDLKKEFCCNGNVVQDKELGKIIQLQGDQRKNVSHFLIQAGLVRKDQIKIHGF 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02541 189 Gene3D - 69 189 - -
Vimu2g02541 189 Pfam Translation initiation factor SUI1 104 177 IPR001950 GO:0003743|GO:0006413
Vimu2g02541 189 CDD eIF1_SUI1 105 188 IPR005874 GO:0003743
Vimu2g02541 189 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 83 189 - -
Vimu2g02541 189 NCBIfam translation initiation factor SUI1 82 189 IPR005874 GO:0003743
Vimu2g02541 189 ProSiteProfiles Translation initiation factor SUI1 family profile. 107 177 IPR001950 GO:0003743|GO:0006413
Vimu2g02541 189 FunFam Eukaryotic translation initiation factor SUI1 79 189 - -
Vimu2g02541 189 SUPERFAMILY eIF1-like 77 189 IPR036877 GO:0003743|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02541 Vimu-Chr2 21475944 21476969 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02541 78 189 Eukaryotic Initiation Factors Gene Family AT5G54940 83.036 3.81e-69 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02541 K03113 - gmx:100787664 235.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02541 2 21475944 21476969 Vimu2g02541 2 21475944 21476969 ECH
Vimu2g02541 2 21475944 21476969 Vimu1g00444 1 2699806 2705443 PCT