Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02540 ATGAGAAACTTGAAAACGTTAAAAGAATTGCTTGCAAGTATGACGGATAGAGAGTCACTTAATAGATTGTGTCCCAAACCATTTAAACCTTCTATGTTGGATTGGTTAATATCTCAAGATGCTCCACACTTTTACACTGAAGAAGAATTGTTTCAATTGGAAGATTACCACCAACAACTTTCAAATTGTTATGAATCACATTTAGAAAGGAATAATACACAAAGAGGTGTTCCCATGAGACAAAGAGAAGAAATGTCAAAAGAAGAAATCAAGGTGCTAAATATCAAAAAGCGAAGAAAAATTATGAAAAGTTCATCATGTTCATGTTCATGTTCATCTCCACCACCATCATCATCTTTACCTCCATTTCTACTACCACCACCACCACCACCATCTTTCCCTCCACCACCATCACCATCTTTACCTCCACCACTACCATCACCATCTTTACCTTCACTTGTACCACCACCACCATCTTCACCTCCAACTATACCACCACAACCATCTTCACCTCCACCTCTAGCATCACCACCATCCTTACCTCTACCACCACCACCATCAACGATAAAAGTGGTAGGTCCAAAACCTCCACCACGACGAAGGGTAGTTGGGATAAGTCAAACACATCCATCATCGGATTTGTCATTGGAATTCAAGAATCGAGTCACCGAATTGAATGGCTATGATCTTAAATTTGTGATGCACAAGATACTTTTCTCATCGGATGTGAAGCCAAACAATAACCGATTATCAATTCCAAAAAAGAAAATCAAATGTGATTTTCTCACTGAAGATGAGATTATGAAGTTGGAAAAAAAAGAAAATAATGATAAAATGATTGGTTTGGAAGTGACTGTATTAGACCCTTGTTTGAGAGAATATACTCTGCCAATGAAGAAGTGGACTATGAAATCAGACACCTACAACCTTGTAAAGGAGTGGAACAAGATTGTGGCAGCTAACAAGTTTAAAGAAGACCAAGAATTACAAATATGGTCTTTTAGAGTTAATACCAAATTATATTTATTCTTAAATAAACTTTGA 1044 0.3697 MRNLKTLKELLASMTDRESLNRLCPKPFKPSMLDWLISQDAPHFYTEEELFQLEDYHQQLSNCYESHLERNNTQRGVPMRQREEMSKEEIKVLNIKKRRKIMKSSSCSCSCSSPPPSSSLPPFLLPPPPPPSFPPPPSPSLPPPLPSPSLPSLVPPPPSSPPTIPPQPSSPPPLASPPSLPLPPPPSTIKVVGPKPPPRRRVVGISQTHPSSDLSLEFKNRVTELNGYDLKFVMHKILFSSDVKPNNNRLSIPKKKIKCDFLTEDEIMKLEKKENNDKMIGLEVTVLDPCLREYTLPMKKWTMKSDTYNLVKEWNKIVAANKFKEDQELQIWSFRVNTKLYLFLNKL 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02540 347 SUPERFAMILY DNA-binding pseudobarrel domain 234 342 IPR015300 -
Vimu2g02540 347 PRINTS Proline rich extensin signature 148 165 - -
Vimu2g02540 347 PRINTS Proline rich extensin signature 110 131 - -
Vimu2g02540 347 PRINTS Proline rich extensin signature 166 191 - -
Vimu2g02540 347 PRINTS Proline rich extensin signature 131 147 - -
Vimu2g02540 347 MobiDBLite consensus disorder prediction 106 208 - -
Vimu2g02540 347 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 199 347 IPR005508 GO:0003677
Vimu2g02540 347 MobiDBLite consensus disorder prediction 115 193 - -
Vimu2g02540 347 Pfam B3 domain-containing protein At2g31720-like 223 319 IPR005508 GO:0003677
Vimu2g02540 347 Gene3D - 224 346 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02540 Vimu-Chr2 21458020 21460335 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02540 129 340 B3 DNA Binding Superfamily AT1G05930 25.116 1.58e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02540 - - vum:124820374 261.536