Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02527 TTGTTAATTTCTGTGAAGATTGATAAGCTGCAATCTACTTTTCATCAATGGGAAAGCACTTCCAATGCTGCAGAACAGGGACGTCTTACGAAGGAGGTTCGTGCTGGATGCGAAAGCATAGAGTGGCAGGTAGACCTATTGCATGCATCTGCTGAACCAATGACTTATCGTTTGGTCACTGATGAGCTTTTTCATTCTTTCAACATAAAGGTGGATGAATTGGATAAAGCAATTGCTGTAGCGTCTAGAGATCCTTCTTGGTATGGAATTGACGAAATTGAGCTTGAAAGCCGAAGGACATGGACAAGCAATGCTCGATCTCAGGTTGTCACAATGAAGAAATCATTGGAGGCTGGAAAGGGCTCAAGTACCACAAGCCACAGCAGTGTAAATGGGATGCGCCAAGAACTCATGAGGCTACCAAGTTCTCATAAAAATGATACCTACAACCAGTATGCTGCCCGAGATAATGATGATTTCATAGAATCGGAATCAGATAGACAAATGCTTCTTATAAAGAAACAGGATGAGGAATTAGATGAGCTTAGTGAAAGTGTACGTAGAATTGGAGGTGTTGGACTTACAATTCATGATGAACTCACTGCACAGGACAGGATTCTAGAGGAACTTGGTTCTGAGATGGACAGTACAACAAATCGTCTTGATTTTGTCCAAAAAAAAGTGGGAATGGTTATGAAGAAGGCTAGTACAAAGGGTCAGATCATGATGATATGTGCTTTGTTGGCCCTGTTCATCTTCCTATTTATCTTAGTATTCTTCACCTAG 786 0.4122 MLISVKIDKLQSTFHQWESTSNAAEQGRLTKEVRAGCESIEWQVDLLHASAEPMTYRLVTDELFHSFNIKVDELDKAIAVASRDPSWYGIDEIELESRRTWTSNARSQVVTMKKSLEAGKGSSTTSHSSVNGMRQELMRLPSSHKNDTYNQYAARDNDDFIESESDRQMLLIKKQDEELDELSESVRRIGGVGLTIHDELTAQDRILEELGSEMDSTTNRLDFVQKKVGMVMKKASTKGQIMMICALLALFIFLFILVFFT 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02527 261 Pfam SNARE domain 206 257 IPR000727 -
Vimu2g02527 261 CDD SNARE_Qc 172 228 - -
Vimu2g02527 261 Gene3D - 3 119 - -
Vimu2g02527 261 SMART tSNARE_6 164 231 IPR000727 -
Vimu2g02527 261 PANTHER GOLGI SNARE BET1-RELATED 126 257 - -
Vimu2g02527 261 Pfam Syntaxin 6, N-terminal 66 113 IPR015260 GO:0016020|GO:0048193
Vimu2g02527 261 SUPERFAMILY t-snare proteins 64 117 IPR010989 GO:0016020|GO:0016192
Vimu2g02527 261 Coils Coil 207 227 - -
Vimu2g02527 261 FunFam syntaxin-61 isoform X1 172 233 - -
Vimu2g02527 261 SUPERFAMILY SNARE fusion complex 167 231 - -
Vimu2g02527 261 Gene3D - 176 240 - -
Vimu2g02527 261 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 169 231 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02527 Vimu-Chr2 21246066 21249329 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02527 70 261 SNARE and Associated Proteins AT1G28490 69.792 7.05e-96 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02527 K08500 - gmx:100787129 352.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02527 2 21246066 21249329 Vimu1g00443 1 2695750 2699398 PCT