Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02522 ATGGAGGGTATGGCAAACAGTAATGGTGATGCCAATGGGGAAAATGGGTTGTTGGCTGTGTTTGGTGGCAATGAATTTGGCGGCGGCGGTGGTGGTGAGGGTGGTGGCAAATTGGAGGAGGTGATTCTAAAGAAGGGTCCTTGGGCAGCTGCAGAAGATGCTGTTCTCATAGATTATGTGACAAAACATGGTGAAGGGAATTGGAATGCAGTGCAGAGGAACACAGGGTTGAATAGGTGTGGAAAGAGTTGTAGGCTTAGATGGGCCAACCATTTGAGGCCCAATTTGAAAAAAGGTGCATTCTCTCCTGAGGAAGAAAAGCTCATCATTGAACTCCATTCACAATTTGGCAACAAATGGGCCAGAATGGCTGCTCTGATTTTGAACTCTGTTTCTTTGGTTGCTGCTGCCACACAGTTGCCTGGAAGAACAGACAATGAGATCAAGAACTATTGGAACACAAGGATCAAACGTCGCCAAAGACAAGGTCTCCCTCTCTATTCAGATGAGAATGATCACCATTGTTCCACAACACCAAATCCTTCTCCATGCTTCACACAAGGAGGATCAAACCCTAATAACAATCTCACAAACTTTGAGTTCTTCAAACAAAGCCACCAACAACACTATCATCAACAACAACAGCAACAAGATCAACAACACTCACAACAACGACCTCTATCTCCATCTGCAACTCAACATTCCCCTCTGAGTTCCCCTTTCCATCACAGACAATCCTTCACCACTTCTTCACCTATCAGTTTCTTAGACCAGTCACCTCTTCCACTCTCCTCCTCTTCACCCTCCTCTCTCTCCTTCACCTTCCAAAGACCAGAACCACTCCTATGCACCCCTCTTCGCTTCAAACGCTACCGTGCCTCTTCAAGCTTCAACCCCCTCCCTGACCTTCCTCTCACTACCCAATTCCCTCATCTTGATGCATTCAGGTTCCCAGTTTCTTCAGGTTTCTCTCCGTTTTTTCAACCCTCTTTCGTAGAATCTGATCGAGGCATTTCTTCTTCTTCTTCCTCCTTCCAACCCAAGTTGGATCTCCCTTCAAGCCAGTTCTACAAACCACCCCAAGAGCAAGACATTAAGCTTGACATTGATTTCAACGACCCTTCTTTCCAAACCAGTAGCGGCTTGCTGGGGGGTCTTCTCTTGGAGGCTCAGGCTTTGGCTTCGGGTCAGAACTCAAAGAAACGACCCCACTTGAGTTTAAACGAGGGAAATGATTTTTTCGATGCATGCCAAAGCTTTGAGGACTTTCCTTCTAGCTCTCTTTACTGGCCTTCTTCTGCATCAGCAGCAAAAGCAAAGGAAGAAGCACCTGACTTGAGCAAGTTCACGAATGAGGAGTTGTCATCATTGCTTACGGTGATTCCATCTTCCAACACACAGGGTCATGACTGGCTCAACAATGGCGATCCTGAAGGGTTGAATGTGCAACCCTGTGGTAGTGGCATGACAGATGACAACTTTGGAGCTGATATGAAGCCCGTGGCTTCATTGTTTCCTCTCACCAACACCACAAACCATAACGAAAACCAAGGTTGCTACCCTTGGGACAATTTGCCTGGTCTCTGCTAA 1590 0.4673 MEGMANSNGDANGENGLLAVFGGNEFGGGGGGEGGGKLEEVILKKGPWAAAEDAVLIDYVTKHGEGNWNAVQRNTGLNRCGKSCRLRWANHLRPNLKKGAFSPEEEKLIIELHSQFGNKWARMAALILNSVSLVAAATQLPGRTDNEIKNYWNTRIKRRQRQGLPLYSDENDHHCSTTPNPSPCFTQGGSNPNNNLTNFEFFKQSHQQHYHQQQQQQDQQHSQQRPLSPSATQHSPLSSPFHHRQSFTTSSPISFLDQSPLPLSSSSPSSLSFTFQRPEPLLCTPLRFKRYRASSSFNPLPDLPLTTQFPHLDAFRFPVSSGFSPFFQPSFVESDRGISSSSSSFQPKLDLPSSQFYKPPQEQDIKLDIDFNDPSFQTSSGLLGGLLLEAQALASGQNSKKRPHLSLNEGNDFFDACQSFEDFPSSSLYWPSSASAAKAKEEAPDLSKFTNEELSSLLTVIPSSNTQGHDWLNNGDPEGLNVQPCGSGMTDDNFGADMKPVASLFPLTNTTNHNENQGCYPWDNLPGLC 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02522 529 MobiDBLite consensus disorder prediction 205 245 - -
Vimu2g02522 529 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 97 160 IPR017930 -
Vimu2g02522 529 CDD SANT 100 154 IPR001005 -
Vimu2g02522 529 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 40 96 IPR017930 -
Vimu2g02522 529 CDD SANT 47 92 IPR001005 -
Vimu2g02522 529 Pfam Myb-like DNA-binding domain 48 107 - -
Vimu2g02522 529 SUPERFAMILY Homeodomain-like 44 152 IPR009057 -
Vimu2g02522 529 SMART sant 97 158 IPR001005 -
Vimu2g02522 529 SMART sant 44 94 IPR001005 -
Vimu2g02522 529 MobiDBLite consensus disorder prediction 167 190 - -
Vimu2g02522 529 ProSiteProfiles Myb-like domain profile. 93 156 IPR001005 -
Vimu2g02522 529 MobiDBLite consensus disorder prediction 171 190 - -
Vimu2g02522 529 Gene3D - 100 159 - -
Vimu2g02522 529 FunFam MYB-related transcription factor 44 97 - -
Vimu2g02522 529 Gene3D - 44 97 - -
Vimu2g02522 529 ProSiteProfiles Myb-like domain profile. 43 92 IPR001005 -
Vimu2g02522 529 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 29 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02522 Vimu-Chr2 21186513 21188663 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02522 18 179 MYB Transcription Factor Family AT4G26930 63.030 6.69e-64 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu2g02522 Myb_DNA-bind_6 1.8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02522 - - vun:114188481 790.03