Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02521 ATGGAGGAGGAGTGGAGAAGGGAGGAGGGGTTGGCGGTGGTTGATGAGAAGAACATACTGCATGGCGGCGATGATGAGCACGGTGGTGAGGATCTTGCACCCCTAGCAGCAGCTCAGGCACCCGCACCCACCTCCGTGGCTAGACAGATGGTGGTAGGAGTTCGGCGGCGGAGGGACTGTAGTAAGCGTCGTTTAGTTGCGACATTGAGAACCGTAGAGAGAGAAAGACGAAAAGCAGTGGAACTGAGACGAAGGGGGCGGTGGTGCAGTGGTGTGGTGTGGCGGCGAAGCAAAGAACAGTGGTTTGGCGTGGTGGCGAAGCAAAGAGCAGAGAGGTTTCATGAGATTGCCTTGAGGGAAGATCTTATATTGCTACAACAAAAGTTTGGGTTCTGGGAGCCGGAAGCAGCCAACATAATGGCGTTACGTGCAGAACTTCTTCAAGCTAAAGAAACCACAATGGAATATTTGGAAGCAAGTGAATTACACCTTGAAAACTTACCAAGTCTAAAGAAATATTCTTGTAGAGATATCGTTGAGTGGCCATCTTTAAAGAATGTGAATGTGAACCATTGTCCCAACCTAAGAAAGTTTGGTTTGGGAAGAACAAAATCAGTAATCTTGGAAAACCAAGCGTCTCTGGCAGATATTTTTGAATCATGGTTCACAAGCAACCAAGCAATTTTAGTAGATTTATTACCGCCCATGGATAACACTTTATCTGAGTTGGATGAATTGAGATTAAATGGTTGTCACAAGTTGTGTTATGTAGCCTCCTTTAAGACACCACTAGAGATGAAGAATTTGAGGAAACTCTTTGTGAGAGCTTGTACAGTTTGGGAAGAGGTTTTGATTGATCAAAAAGAAGAATCTACTTCAACCGATATGCCCTTAGGCACGACCATACATAACATAGAAATCACACTCGGAAAGGGTGGACAATTAGCTAGAGCAGCTAGTGCTGTAGCGAAACTAATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGAGAGGTCCGTTTGATATCCAAAAACTGCTCGGCAACAGTTGGACAAGTGGGAAATGTTGGGGTAAACCAGAAAAATTTAGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAACGTCCTATAGCAAGAGTAGTAGTTATGAACCCTGTAGACCATCTGCATGGGGGTGGTGAAGGGAGGGCCCTAATTGGTAGAAAAAAACCCGCAACTCCTTGGGGTTTTCCTGCACTTGGAAGAAGAAGTAGAAAAAGGAAGAAATATAGTGATAGTTTGATTCTTCGTCGTCGTACTAAATAG 1314 0.4482 MEEEWRREEGLAVVDEKNILHGGDDEHGGEDLAPLAAAQAPAPTSVARQMVVGVRRRRDCSKRRLVATLRTVERERRKAVELRRRGRWCSGVVWRRSKEQWFGVVAKQRAERFHEIALREDLILLQQKFGFWEPEAANIMALRAELLQAKETTMEYLEASELHLENLPSLKKYSCRDIVEWPSLKNVNVNHCPNLRKFGLGRTKSVILENQASLADIFESWFTSNQAILVDLLPPMDNTLSELDELRLNGCHKLCYVASFKTPLEMKNLRKLFVRACTVWEEVLIDQKEESTSTDMPLGTTIHNIEITLGKGGQLARAASAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKNLGRAGSKCWLGKRPIARVVVMNPVDHLHGGGEGRALIGRKKPATPWGFPALGRRSRKRKKYSDSLILRRRTK 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02521 437 Gene3D - 260 357 IPR014722 -
Vimu2g02521 437 SMART Ribosomal_L2_C_2 295 414 IPR022669 GO:0003735|GO:0005840|GO:0006412
Vimu2g02521 437 Gene3D Ribosomal protein L2, domain 3 358 436 IPR014726 -
Vimu2g02521 437 MobiDBLite consensus disorder prediction 417 437 - -
Vimu2g02521 437 Pfam Ribosomal Proteins L2, C-terminal domain 295 412 IPR022669 GO:0003735|GO:0005840|GO:0006412
Vimu2g02521 437 NCBIfam 50S ribosomal protein L2 295 436 IPR005880 GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
Vimu2g02521 437 SUPERFAMILY Translation proteins SH3-like domain 295 434 IPR008991 -
Vimu2g02521 437 FunFam 50S ribosomal protein L2 357 437 - -
Vimu2g02521 437 PANTHER RIBOSOMAL PROTEIN L2 293 435 IPR002171 GO:0003735|GO:0005840|GO:0006412
Vimu2g02521 437 MobiDBLite consensus disorder prediction 412 437 - -
Vimu2g02521 437 SUPERFAMILY RNI-like 161 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02521 Vimu-Chr2 21175805 21183848 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02521 259 397 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 33.544 2.52e-16 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02521 K02886 - csin:114298497 280.796