Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02504 ATGAGCGCAATAGGGTATGATGTTGGGAGGAAGAAGCACTACAGAGGAGTCTGCCAGCGGCCTTGGGGAAAGTTTGCCACCGAGATCCGCGACTCAAACAAGCGTGGGTCGAGAGTTTGGCTTGGAACCTTCGACACCGCCATCGAAGCCGCCAAGGCCTACGACCGTGCAGTCTTTAGGCTCTGCGACTCAAAGGTCATCCTCAACTTCCCGTTCGAAGCAGGCACGGCGGATGCCACTGCTAAGGTCGAAGACGAAAGGAAGTTGCTTACTAATGGTTATCGGTTTAAGAAGTTAGTTCAGCTCTACATCAGAGAAGTGATGCGGTTGCTGGGAGTGTCGTCTAACAGCAGTTCAGACAAGGGTTTCCAGTTCGTTCCTCAGTTTTTGATAATCACTATAGATAAGTTGGGCAACCAATTGAAGTTTTGA 432 0.5023 MSAIGYDVGRKKHYRGVCQRPWGKFATEIRDSNKRGSRVWLGTFDTAIEAAKAYDRAVFRLCDSKVILNFPFEAGTADATAKVEDERKLLTNGYRFKKLVQLYIREVMRLLGVSSNSSSDKGFQFVPQFLIITIDKLGNQLKF 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02504 143 ProSiteProfiles AP2/ERF domain profile. 13 71 IPR001471 GO:0003700|GO:0006355
Vimu2g02504 143 PANTHER DNA-BINDING DOMAIN 11 86 IPR044808 GO:0003700|GO:0009873
Vimu2g02504 143 FunFam Ethylene-responsive transcription factor 2 12 73 - -
Vimu2g02504 143 Pfam AP2 domain 13 61 IPR001471 GO:0003700|GO:0006355
Vimu2g02504 143 SUPERFAMILY DNA-binding domain 13 72 IPR016177 GO:0003677
Vimu2g02504 143 SMART rav1_2 13 77 IPR001471 GO:0003700|GO:0006355
Vimu2g02504 143 PRINTS Ethylene responsive element binding protein signature 37 53 IPR001471 GO:0003700|GO:0006355
Vimu2g02504 143 PRINTS Ethylene responsive element binding protein signature 14 25 IPR001471 GO:0003700|GO:0006355
Vimu2g02504 143 CDD AP2 12 71 IPR001471 GO:0003700|GO:0006355
Vimu2g02504 143 Gene3D AP2/ERF domain 12 73 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02504 Vimu-Chr2 21025932 21036998 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02504 10 75 AP2-EREBP Transcription Factor Family AT5G47230 81.818 1.53e-33 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vimu2g02504 AP2 5.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02504 K09286 - zju:107430379 124.79