Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02502 ATGTCGAATTTGCCCCAATCGTTGTCTATGGGTGCGGCCTTCGGTGGCGGCGGTCCGCCATCTTCGTCCGTTGGGACCGGAACACAGGGCTCCGGTGGGGGCAAAGATCGGAAGATGGCATCTGCTGAGCAATTGGTATTGGAACTCAGCAACCCTGAACTCCGAGAAAATGCGCTTCTGGAACTGTCTAAGAAGAGGGAGCTATTTCAAGATCTGGCTCCTTTGTTATGGAATTCTTTTGGTACTATTGCTGCACTTTTGCAGCTAGTTTCTTCACAATTTTCCTCTACTGACAAGGGTTTGATATTTTTGTTTCAGGAAATAGTTTCAATTTACCCAGTTCTTTCACCACCAAATCTTACTCCTGCACAATCAAATCGAGTGTGTAATGCTCTTGCTCTTCTTCAGTGTGTAGCATCTCACCCTGATACAAGGATGCTATTCCTCAATGCTCATATACCTTTATATCTGTACCCCTTCCTTAATACAACAAGCAAGTCCAGACCATTTGAGTACTTGAGGCTTACCAGTCTTGGTGTCATCGGTGCATTGGTGAAGGTTGATGATACAGAAGTTATAAGTTTCCTTCTTTCAACAGAAATAATTCCTCTGTGCTTGCGCACCATGGAAATGGGTAGTGAGCTATCCAAAACAGTTGAGTTTACTGATTCTTTGTTTTTAGTCTTTGTGAGCACGTGTGTCTATCTTTCTCGTTCTAATACAACCATTTATGATTTATCTGTAGCAACATTTATCGTTCAAAAAATTCTTTTGGACGATGTCGGCCTGGACTATATTTGTACTACAGCCGAGCGCTTTTTTGCAGTAGGTAGAGTTTTGGGGAACATGGTGGCAGCTCTTGCTGAGCAACCCTCATCTCGTCTACTGAAGCATATCATTCGGTGCTATCTTCGCCTGTCAGATAATCCAAGGGCTTGCGATGCATTAAGAAGCTGTCTACCAGACATGTTAAGAGATGCCACTTTCAGCAGTTGCCTTCGTGAAGACCCCACAACTAGAAGGTGGCTACAACAATTGCTTCACAATGTTGGAGTGAATAGAGTTCCTGCACTACAAGCTGGAGGAGGTTTCGATCATATGATTGTTACCTGA 1113 0.4385 MSNLPQSLSMGAAFGGGGPPSSSVGTGTQGSGGGKDRKMASAEQLVLELSNPELRENALLELSKKRELFQDLAPLLWNSFGTIAALLQLVSSQFSSTDKGLIFLFQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVEFTDSLFLVFVSTCVYLSRSNTTIYDLSVATFIVQKILLDDVGLDYICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFSSCLREDPTTRRWLQQLLHNVGVNRVPALQAGGGFDHMIVT 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02502 370 Gene3D - 34 351 IPR011989 -
Vimu2g02502 370 SUPERFAMILY ARM repeat 47 212 IPR016024 -
Vimu2g02502 370 Pfam Cell differentiation family, Rcd1-like 101 219 - -
Vimu2g02502 370 Pfam Cell differentiation family, Rcd1-like 248 350 - -
Vimu2g02502 370 Pfam Cell differentiation family, Rcd1-like 45 94 - -
Vimu2g02502 370 PANTHER UNCHARACTERIZED 38 220 IPR007216 GO:0006402|GO:0030014
Vimu2g02502 370 MobiDBLite consensus disorder prediction 11 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02502 Vimu-Chr2 20997696 21006018 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Rcd1-like Vimu2g02502 Rcd1 5e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02502 K12606 - gmx:100784529 555.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02502 2 20997696 21006018 Vimu1g00423 1 2560937 2567584 PCT