Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02496 ATGGACACTGAGCTCTCTACTTTTATGCCTGGAGCTATTTTCAGAATTAGCATGAGAGTTTTTTATCAAATTTTTCTACTTCAACTACCAGATCCTCCTTTTATATTTATACCGAGCCAAATCTTTGCTCAAGAGGGTCCAAATTTATTACGGACAATGTTTTTGTCATTGTTATTATCACCGTTATTGCCACTGTCATCGCTCAGACTCTTCGACACTAACATTATTGACAGGCTAGTAAACATAGTTACTGATGAAATTCGAGGAATCTTCCATATTGATGAACATGCTGTTACTTCTTCGGAATCTCAAATCCCAGAAATTCCTCTAAGGATTGTAATCAATGTTACTCATAACAGCATACATGCAACAACACAATATCTTTTAAGAACGGTTTCATCAATCAAAAAACCCATTGACATGTTGAAGAAATCTACAGTGTTACAGATTGAGTGTTGTTGTTGCATATGCTTGGATGAATTCGAGCTCAATGCTGAGTGCTATGCACTTCTATGTCAACACTTTTTTCATCAAGAATGTATTATGCGCTGGTTACAAACCAATCAGACCTGTCCCATTTGTCGTCAATCTCTACGAACCGTAAAAGACTAG 612 0.366 MDTELSTFMPGAIFRISMRVFYQIFLLQLPDPPFIFIPSQIFAQEGPNLLRTMFLSLLLSPLLPLSSLRLFDTNIIDRLVNIVTDEIRGIFHIDEHAVTSSESQIPEIPLRIVINVTHNSIHATTQYLLRTVSSIKKPIDMLKKSTVLQIECCCCICLDEFELNAECYALLCQHFFHQECIMRWLQTNQTCPICRQSLRTVKD 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02496 203 ProSiteProfiles Zinc finger RING-type profile. 154 195 IPR001841 -
Vimu2g02496 203 Pfam Ring finger domain 154 195 IPR001841 -
Vimu2g02496 203 SUPERFAMILY RING/U-box 140 200 - -
Vimu2g02496 203 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 201 IPR013083 -
Vimu2g02496 203 SMART ring_2 154 194 IPR001841 -
Vimu2g02496 203 PANTHER TARGET OF ERK KINASE MPK-1 68 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02496 Vimu-Chr2 20916456 20917067 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02496 154 195 C3H Transcription Factor Family AT1G68070 52.381 5.46e-11 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02496 - K19039 vra:106753434 209.534