Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02493 ATGGAAGAACCTACCTCCAATGATGACTCTCATCTTCCACATTCTTCTCCAATCATGTTGTTTGATGCCAAAACACTAGTCACGGATGAGATGGATTTCTTTGCTCACAACAACAACAAAAACAACACAAATGTATTTCCCCATGATCATGAAATGCTGCACCAAATGGAGCTTCATGTCGATACTAGTTTAGATCTCCTTACAAAGACTTCTCCTACCAATAGATCAACTGTGGGAGAAGGATCATCCGAAGCAAGGGCAAATGAAAGAGATAATAAGTTTGCAGCTATGCTAGCTGAATTGCACCACATGAATGCTGAAAATCAACGCTTGAGAGATGAGGTTGATAAGGTGAACGATAAGTACCATGCTTTACACAATCAACTTATCAAACAGATGGAGAAACAACGTAAGAATGAGGGTAAGAAAGCTGATATGATTCCAAGGCCATTCTTGGATATTGGAGTTGCTATGAAAGAAGAGAATTCGCAGCAATATTCGAAGGGAAAACTGCAAGATAGCAAAAACATGATGGACTGGATTGAGAGCAAGAAACAGAAGATTTACACTAATAAAGATGTTACTGAGTTGGAGACATCTGAGAAAGCTATACCAAGGTGGCTCTCAAACGAAGTCTCAAGATCGAGTTCTTTCAAGGATGTTGATGAAGCATCAGAAACCATGTCAATGATCAAGAAAGCTCGTGTATCAGTTCGAGCAAGATCTGTTTCTTCTATGATTTCTGATGGATGTCAATGGAGAAAGTATGGGCAGAAGATGGCTAAAGGGAACCCATGTCCAAGAGCTTATTATCGTTGTTCAATGGGGACTGGTTGCCCAGTTCGGAAACAAGTGCAAAGGAGTGCTGAAGATCAAAGTGTGTTGATCACAACATATGAAGGACAGCATAATCATGTACTTCCTCCAGCTGCCAAACCAATGGCATCCACCACATCTGCAGCTGCATCAATGCTTCTTTCAGGATCAATGCCAAGCTCAGATGGCCTTCTACATCCAAACATTTTAGAAAGTGCAACACTTCCATTTTCACATAACTTAGCAACCCTCTCAGCTTCAGCTCCATTTCCAACTATCACTTTGGATCTCACTCAAACTCAAACTCCCACCAATAATATTAATACTTCCTCACAACAAGATCCACCACAGGATTACCAACTCAGCCTACTTTCCCCACTTTTGGCACCAAATTTTTTTCACCAGAGTAAGCTTTCTACCTTACAAGCCTCTCAGGGAACAGAAACTGCTTCATTTGCTGACACAGTAAATGCAGCAACAGCTGCTATCACCACAGACCCCAAGTTCAGTGCAGCTCTTATGGCAGCCATAACATCTATCATTGGAAGTTCACACCCAGTGGAGACTCCGCATTGCAATAACAAACAAGACTAG 1410 0.4149 MEEPTSNDDSHLPHSSPIMLFDAKTLVTDEMDFFAHNNNKNNTNVFPHDHEMLHQMELHVDTSLDLLTKTSPTNRSTVGEGSSEARANERDNKFAAMLAELHHMNAENQRLRDEVDKVNDKYHALHNQLIKQMEKQRKNEGKKADMIPRPFLDIGVAMKEENSQQYSKGKLQDSKNMMDWIESKKQKIYTNKDVTELETSEKAIPRWLSNEVSRSSSFKDVDEASETMSMIKKARVSVRARSVSSMISDGCQWRKYGQKMAKGNPCPRAYYRCSMGTGCPVRKQVQRSAEDQSVLITTYEGQHNHVLPPAAKPMASTTSAAASMLLSGSMPSSDGLLHPNILESATLPFSHNLATLSASAPFPTITLDLTQTQTPTNNINTSSQQDPPQDYQLSLLSPLLAPNFFHQSKLSTLQASQGTETASFADTVNAATAAITTDPKFSAALMAAITSIIGSSHPVETPHCNNKQD 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02493 469 Coils Coil 94 128 - -
Vimu2g02493 469 SMART WRKY_cls 247 307 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu2g02493 469 MobiDBLite consensus disorder prediction 69 88 - -
Vimu2g02493 469 ProSiteProfiles WRKY domain profile. 242 308 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu2g02493 469 MobiDBLite consensus disorder prediction 69 83 - -
Vimu2g02493 469 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 80 458 IPR044810 GO:0003700
Vimu2g02493 469 FunFam probable WRKY transcription factor 31 232 309 - -
Vimu2g02493 469 Pfam WRKY DNA -binding domain 249 305 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu2g02493 469 Gene3D WRKY domain 232 309 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu2g02493 469 SUPERFAMILY WRKY DNA-binding domain 244 308 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02493 Vimu-Chr2 20881888 20884515 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02493 95 453 WRKY Transcription Factor Family AT4G04450 42.748 3.40e-87 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu2g02493 WRKY 3.2e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02493 - - pvu:PHAVU_006G047300g 640.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02493 2 20881888 20884515 Vimu1g00416 1 2511599 2513845 PCT