Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02487 ATGGGTGGTGACAACGCCGGGGAATCCGGCTCAAGGCCGGTTTTTTTCAAAGAACAGAAATACCGCGGCGTCCGGAAGAGACCGTGGGGCCGGTTCGCCGCCGAAATCAGAGACCCTTTGAAGAAAGCGAGGGTGTGGCTCGGAACCTTCGACTCCGCCGAGGATGCGGCGCGTGCGTACGACGCGGCGGCGAGAACCCTCCGGGGACCCAAGGCGAAGACCAACTTTCCACTCCCTCCGCCGTTCTATCACCCCGATCCGTTCACTGACCATCGGTATTTCGCAGGCCCTGGCGAGCCCTTTCACGATCACCGGCAGCCCACCTCCAGCGGCATGAGCAGTACCGTCGAGTCATTCAGCGGCCCACGCGCCGCCGCCACAACGGCGAACCCGGTGGCCGTCGCCCGCAGGTACCCGCGAACGCCGCCGGTAGTCCCCGAGGACTGCCGCAGCGACTGCGACTCTTCGTCCTCTGTCGTGGAAGACGGCGACGGCGACAACGCTGCGTCGTCGTTTCGGCGAGAACCGTTGCCGTTTGATCTCAACGTTTTACCGTTGGAGGATTCCGACGCGGGAAACGGTGGCGTGGATAATGATATGTTCTGCACCGTTCTTTGTCTCTGA 624 0.6282 MGGDNAGESGSRPVFFKEQKYRGVRKRPWGRFAAEIRDPLKKARVWLGTFDSAEDAARAYDAAARTLRGPKAKTNFPLPPPFYHPDPFTDHRYFAGPGEPFHDHRQPTSSGMSSTVESFSGPRAAATTANPVAVARRYPRTPPVVPEDCRSDCDSSSSVVEDGDGDNAASSFRREPLPFDLNVLPLEDSDAGNGGVDNDMFCTVLCL 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02487 207 FunFam Ethylene-responsive transcription factor 2 19 78 - -
Vimu2g02487 207 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 20 182 - -
Vimu2g02487 207 SMART rav1_2 20 83 IPR001471 GO:0003700|GO:0006355
Vimu2g02487 207 Gene3D AP2/ERF domain 19 78 IPR036955 GO:0003700|GO:0006355
Vimu2g02487 207 SUPERFAMILY DNA-binding domain 20 78 IPR016177 GO:0003677
Vimu2g02487 207 Pfam AP2 domain 20 69 IPR001471 GO:0003700|GO:0006355
Vimu2g02487 207 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Vimu2g02487 207 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700|GO:0006355
Vimu2g02487 207 CDD AP2 19 77 IPR001471 GO:0003700|GO:0006355
Vimu2g02487 207 ProSiteProfiles AP2/ERF domain profile. 20 77 IPR001471 GO:0003700|GO:0006355
Vimu2g02487 207 MobiDBLite consensus disorder prediction 103 173 - -
Vimu2g02487 207 MobiDBLite consensus disorder prediction 106 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02487 Vimu-Chr2 20745727 20748776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02487 17 207 AP2-EREBP Transcription Factor Family AT1G50640 59.420 9.52e-53 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu2g02487 AP2 1.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02487 K09286 - gmx:100782025 301.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02487 2 20745727 20748776 Vimu2g02487 2 20745727 20748776 ECH
Vimu2g02487 2 20745727 20748776 Vimu1g00403 1 2407971 2408627 PCT