Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02485 TTGCATTTGGGTGTGGCAATGGGTAGCGAAGAAGAGAGGGTTCTTGAGAACCAACTCGAACTTCAATTGCAAGAGCAAAGGGATTCTCTCTCTGCTATCGATCAAGCTCTCCTCTCTGATCCAACCAACCCTGAGCTTCTCGCGGTCGACGGTTGTTTGCTTCTGTTAAAGATTGAATCCTTCTGTGAACAAGTGGGAATGAAATGGGGTTATTTTTACTGGTTTGTAGAAATTGGTATTGTAGTTGGCAAAAAGGGCGGAATGTTGAAGCTTTTGAACATATGTAGACTTGTGACTCCTAAAATTTCAATGGCTGTGGTTCATGAGGAGCTTGTCCAGGCAATTAAGGATGCAGAAGAAGGACTTTTTCACCTAAAACGTGCACGATTGTTACAGGAAGCGGATGCAGTTCTGCATAACACTAATATTTTTGCTGAAGAGGAGAAAGTGGAACTCCTTGATCCCAGAGATGTTGAACCAGAACCTTTGGAGGGAAAAAGTCATTCTGTTGGATCTAAATGTAGATTCCGTCACATAGATGGGCGCTGGTACAATGGTCAAGTGGTGCAGTTGGATAATTCAGTGGCAAAAGTTTCATTCCTTACACCTACGTCTGAGAATATGCTGATGTGCAAGTTCTTTTTACAACAACGATGTCGATTTGGTAGTAACTGTCGCCTATCACATGGAGTTGATGTTCACTTGTCCGCTCTTAAGAAATTTGTCCCTACAATCTGGAAGCAATCCCTTGTCGGGTCAAGCATATGGGCAGTCTCAACTGCAAATTCAGGCACTTGGAGAGAAGCCGAACTCGAGTCCTGGGATGAAAAGGCTGGAGTTGGACAAGTTGTTTTCCGAGATGATGGGAGTACTGTGAAACTTGGTGCAGAACAAATGGCATTGTCTGAGCATGCAGAAGTGAGTGACTCAGAGAGTGATTCCAGCATACAGCAATCTGAGTCCAGTGACTATGAGGAAGACGAGGAATCACAAGGTTTAGGATTTCTGGAGAGTACCAACCTACAGAGAGGAGTTCAAACTGAAACTGCGACATTTGCCACTTGGGAAAACCACACCAGAGGCATAGCTTCCAAAATGATGGCTAATATGGGGTACAGAGAAGGAATGGGTTTGGGTGTAACGGGTCAGGGAATGCTGGACCCCATACCAGTGAAGATGCTACCACCAAAGCAATCCTTGGATCATGCTCTTGAGTCTCATAGAAGGGAAGAGAATGAAGACAAGGAATTGAAGAAGAAACGGAGCCGAGGTGGTAAGAGAAAACGTGAGAAGAAATTTGCAGAAGCAAATCGTGCAGCAAAAGAGGAAGAGGAGTCAACATCAGATGTCTTTGCATTGATAAACAATCAGCTGGCAATGCACAGTGAGGCTTTCGGTGGTGGATCAACGAAGAAGCAACATAGTAAAGGTTCCGAGGAAGGTAAAAAGGTAGATAGACGAGCACTGGTTGCTTATGAGGAAGAGGTGAAGGATTTGAAGATGAAGGTTGAAAAGCTTGAGCAAATTGTGAATGTCAATAAGAAAGAGAAGGCTGTGTATGAGGCTGCTATGAGAAAACTAAATGAAACCCGCAAAGCCTTGGCTGATGCCGAAGCAGTTCATGCCTCTGCCTCAAATGCAGTCGTTAGCAAAGAAAAAGAGAAAAGATGGCTCAAGTTTTAG 1683 0.4415 MHLGVAMGSEEERVLENQLELQLQEQRDSLSAIDQALLSDPTNPELLAVDGCLLLLKIESFCEQVGMKWGYFYWFVEIGIVVGKKGGMLKLLNICRLVTPKISMAVVHEELVQAIKDAEEGLFHLKRARLLQEADAVLHNTNIFAEEEKVELLDPRDVEPEPLEGKSHSVGSKCRFRHIDGRWYNGQVVQLDNSVAKVSFLTPTSENMLMCKFFLQQRCRFGSNCRLSHGVDVHLSALKKFVPTIWKQSLVGSSIWAVSTANSGTWREAELESWDEKAGVGQVVFRDDGSTVKLGAEQMALSEHAEVSDSESDSSIQQSESSDYEEDEESQGLGFLESTNLQRGVQTETATFATWENHTRGIASKMMANMGYREGMGLGVTGQGMLDPIPVKMLPPKQSLDHALESHRREENEDKELKKKRSRGGKRKREKKFAEANRAAKEEEESTSDVFALINNQLAMHSEAFGGGSTKKQHSKGSEEGKKVDRRALVAYEEEVKDLKMKVEKLEQIVNVNKKEKAVYEAAMRKLNETRKALADAEAVHASASNAVVSKEKEKRWLKF 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02485 560 SUPERFAMILY CCCH zinc finger 206 230 IPR036855 GO:0046872
Vimu2g02485 560 ProSiteProfiles G-patch domain profile. 359 405 IPR000467 GO:0003676
Vimu2g02485 560 Coils Coil 426 446 - -
Vimu2g02485 560 Coils Coil 489 516 - -
Vimu2g02485 560 Gene3D - 170 242 - -
Vimu2g02485 560 SMART G-patch_5 357 403 IPR000467 GO:0003676
Vimu2g02485 560 ProSiteProfiles Zinc finger C3H1-type profile. 205 232 IPR000571 GO:0046872
Vimu2g02485 560 SMART c3hfinal6 205 231 IPR000571 GO:0046872
Vimu2g02485 560 MobiDBLite consensus disorder prediction 429 447 - -
Vimu2g02485 560 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 22 104 560 - -
Vimu2g02485 560 Coils Coil 520 540 - -
Vimu2g02485 560 MobiDBLite consensus disorder prediction 464 484 - -
Vimu2g02485 560 Pfam G-patch domain 359 400 IPR000467 GO:0003676
Vimu2g02485 560 Coils Coil 400 420 - -
Vimu2g02485 560 MobiDBLite consensus disorder prediction 403 420 - -
Vimu2g02485 560 MobiDBLite consensus disorder prediction 403 447 - -
Vimu2g02485 560 MobiDBLite consensus disorder prediction 301 341 - -
Vimu2g02485 560 Pfam CCCH-type zinc finger 210 230 IPR041367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02485 Vimu-Chr2 20720243 20730257 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vimu2g02485 G-patch 2.8e-11 CL0449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02485 - - gmx:100796284 732.25