Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02479 ATGACTTCTTCATTCTTTCTGGACGCCGGTCTTCGTCAAGTGCACCATTTTAGCGGTCTTGACTCCATTCACGGGTTGCTTGCTGTGACGCGATCTTCACACAGAAACCCCAACTCGCAGGGGCATCATCACGTTTTTCGGTTGTACCGTCGATGGAGCTCCAGATCTAGACCGGACAAAGAAGGAATTCCCCCGGACCAGCAGAGGTTGATCTTTGCCGGGAAACAGCTGAAGGATGGTCGTACTCTCGCCGATTACAACATCCAAAAAGATAGATTGGGGGAATTGTATTTAGCCATATACGTCTATAGGTTTTTGAGGTGGAAATATGTAGAGTCAACATCGCATCTTGTTTTGAGGCTTCGAGGTGGTATTATTGAGTCATCTTTGATGGCATTGGCCAGGAATGTTGCAACAGAGCCTAATTTGAAGGAGTGGACTGCAAGGACAAAAATTTATGACAGATGTGATGAAACTGGCGTTGATGGTGTTCTAGTTCCAGGAGGTTTTGGTGATAGAGGAGTGCAAGGGAAAATTCTTATGGCTAAGTATGCTTAA 558 0.457 MTSSFFLDAGLRQVHHFSGLDSIHGLLAVTRSSHRNPNSQGHHHVFRLYRRWSSRSRPDKEGIPPDQQRLIFAGKQLKDGRTLADYNIQKDRLGELYLAIYVYRFLRWKYVESTSHLVLRLRGGIIESSLMALARNVATEPNLKEWTARTKIYDRCDETGVDGVLVPGGFGDRGVQGKILMAKYA 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02479 185 Gene3D - 56 128 - -
Vimu2g02479 185 Pfam Glutamine amidotransferase class-I 130 185 IPR017926 -
Vimu2g02479 185 SMART ubq_7 41 99 IPR000626 GO:0005515
Vimu2g02479 185 Gene3D - 129 185 IPR029062 -
Vimu2g02479 185 ProSiteProfiles Ubiquitin domain profile. 59 90 IPR000626 GO:0005515
Vimu2g02479 185 SUPERFAMILY Ubiquitin-like 55 92 IPR029071 -
Vimu2g02479 185 PANTHER UBIQUITIN 59 134 - -
Vimu2g02479 185 PRINTS Ubiquitin signature 59 79 IPR019956 -
Vimu2g02479 185 PRINTS Ubiquitin signature 80 101 IPR019956 -
Vimu2g02479 185 Pfam Ubiquitin family 59 91 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02479 Vimu-Chr2 20591939 20595727 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02479 59 135 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 67.532 1.73e-26 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02479 K02927 - twl:119998748 95.5153