Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02475 ATGATGGAAGTGCTTTTTTATATGGTGATGTACTGGGCCGGGATTTTCATACCCATGCTTCTCTGCTCTTGCTTATATGTTATAGTATCTCATATAGGGTTTATCCTCACTCCCCTCCTACGGGCCAAGCCCGTCTCCAACTCCGGCCTCTCCATCACCGTAAAAGGCGTTCTCATGGGCTTCAAATGCGCCATCTGCCTCGACGGCATCGCCACCGACCAACTCGCTCGACTGGTTCCCTGTTGCAACCACGCCTTCCATGTGGAATGCGCTGACACATGGCTCTCCAAGCACCCTACGTGCCCTCTCTGTAGAGCCAAACTCGACCCCATACTGCTTTTCTCTTGA 348 0.523 MMEVLFYMVMYWAGIFIPMLLCSCLYVIVSHIGFILTPLLRAKPVSNSGLSITVKGVLMGFKCAICLDGIATDQLARLVPCCNHAFHVECADTWLSKHPTCPLCRAKLDPILLFS 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02475 115 ProSiteProfiles Zinc finger RING-type profile. 63 105 IPR001841 -
Vimu2g02475 115 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 59 110 - -
Vimu2g02475 115 Pfam Ring finger domain 62 105 IPR001841 -
Vimu2g02475 115 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 110 IPR013083 -
Vimu2g02475 115 SUPERFAMILY RING/U-box 60 111 - -
Vimu2g02475 115 SMART ring_2 63 104 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02475 Vimu-Chr2 20463418 20463784 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02475 60 110 C3H Transcription Factor Family AT5G05810 56.863 6.60e-19 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02475 K19037 - gmx:100817919 117.472