Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02460 ATGGCATCTTCAGATGACGAGGGAGAGTCTCAGCCACTATCTGTGTCAAATTACTATTTTGAAGATGACAAAGATGTGCCGGTGTGTTTTTCCGTGTTACCAATTGTGTGGAGTGAGTCAGAGAGTCCAGTTAGCAAGAAAGTACAGGTGTTTTTGCGTGGTTTTGCAGATAATGGGCTGCAGAAGATTTTCATGCAAGTTGTTGCGTGGAGGTTTGATCTTTCCTATGTGAGGCCTGAGATATCGGTGTTGTCAAAGGATGGGAGATGGATTAAACTTGAGAAGCCTAGGAAGAGCTATGAGGAAACCATAAGATCTATTTTGATCACCATTCACTTCATGGGTTATGTGAAGAGGAATCCTGACTCATCTGCCAAGTCTGCGTGGGATAGCTTGAGTAAGAATAAGGAGTTTAGATCTTATGAGGTTATGCCTTCGCAAAATGATATATTAAATCATATGACTTTAATGGGTGAAGCTGCCAAAAGAGATGCTGGCTTAGCAAAGTCCAAGCTTTTCCTCCTGGTTCGGGAAGATAAACATAAGCTGAAGATTAAGAAACTTTCTGATGAGGAAATTAAAGATTTAGCACGACCTGGATTTATAACTGATGATACTGACAATGATTTGATCGATGAAATTGATGAAGATTCAGATGGGGAGGATGGGTTGTTTGATTCTGTTTGTGCGATTTGTGACAATGGTGGTGAACTTTTGTGTTGTGATGGAAAGTGCATGAGGTCATTTCATGCTAATGAGGAGGATGGTGAAGAATCTGCTTGTGCCTCTCTTGGTTTTAGCCAGAAGCAAGTTGATGATTTCCAGAACTTCTACTGTAAGAATTGTGAATATAATCAACATCAGTGCTTTGCATGTGGTACTCTAGGCTGCTCTGATAAATTTTCTGGTGCTGAGGTCTTCAAATGTGCGTCTGCAACCTGTGGTTTCTTTTATCATCCACAATGTGTTGCAAAGTTACTTCACCGGGTAGTTGAGGAGGCTCCAGATCCGAAGGAACTTGAGAGAAATATTGCTGAAGGAGGAGCTTTTACTTGTCCTACTCATTACTGTTGTGTCTGTAAAGGAATGGAAGACAAAAATGAACATGATTTTCACTTTGCTGTTTGTAGGCGTTGCCCCAAGTCCTACCATCGCAAATGCTTGCCAAGGAAGATTGCATTTGATGACATAGAGGATGAAGATATTGTAACAAGGGCTTGGGAAGACCTTCTACCCAACAATCGCATTCTTATATATTGTTTAAAACATGAGATTGATGATGAATTTGGGACTCCTGTAAGGGATCATATAAAGTTTCCCAATATAAAAGCTTCGGTTCGAGAAGTTAATGATGAGGACAATGAAAAGCCTGCAAACAAAGAGAGGGTTATATTGGACAAGAACAGCATTGTCTCTGAAAGTTTAATTGGAAAAAAGGCTGCTTTGAAATTTTCTAATAAACAGTCTGGTAAAATGTCTTCTGGAAAAGTGGTTGACAAGAAGTCTGAAAAGATTTCTGGATCAAATATCTCAAGGAAGAAAACAAATGAGGCATCAAGAACGGGTTTGAATGAAAGTAAGAGGCCATTAGTCCCAAAGGAAACCAGAAAGTCTGAGGGTGCAGAAAATAAGTCCTCATTGGGTGCAAAATTATTTGACTTTTTGCAAAATCGTTCTGAGCAAATTAATTCTGGTAATAAGGTTAATAATGTAGCTAATAATTCCCGGCATGTTAAGCCTACTAAAAAGCTGAGTAGTGCATTACCTTCGTTAGATGAAGATGCAGAGAGGAGATTGGTGGCTATGTTTAAAGAAGCTACTTCATCAGTTACTTTGGAGGATGTTGTAAAAGAGCACAATTTTGTTAGTACTCATACCACCCACTCATTGAGAAATGTTGTGGAGAAAACCATTACGTTGGGGAAATTGGAAGGCTCAGTTGAGGCTGTTCGAACAGCTCTAAGGATGCTAGAAGGTGGGCACAATGTTCGGGATGCTGCAGCTGTTTGTGGTCCTGATGTTCTTAACCAAATATTTAAGTGGAAGGATAAGCTGAAAGTATATCTTGCACCTGTTCTATATGGTAATCGGTACACATCGTTTGGCCGCCATTTTACACAAATTGAAAAGCTGGAAGGGATTGTTGATAAACTGCATTGGTATGTTCAGAATGGTGATACAATTGTGGACTTCTGTTGTGGTGCTAATGACTTCAGCATTCTTATGAAGAAAAAGCTTGAAGAGACTGGAAAGAGATGCTCATACAAAAACTTTGATCTACTTCCAACGAAGAATGATTTTAATTTTGAGATGCGAGATTGGATGACTGTACAAACAGAGGAGTTGCCTACAGGGTCAAAGTTGATCATGGGCTTAAATCCCCCCTTTGGACTAAAGGCAGCATTGGCCAACAAGTTTATAGACAAAGCTCTTGAGTTCAGACCGAAGCTCATGATTCTCATTGTACCATCAGAGACACAGAGGCTAGATGAGAAACGGCGTCCGTATGATCTTGTCTGGGAGGATGATAGGTTTCTATCGGGCAAGTCGTTTTATCTACCTGGATCAGTTGATGCTAATGACAGGCAAATAGAGCAGTGGAATGTAAAGCCACCCCCACTGTACCTTTGGAGTCGTCCTGATTGGACAAGCAAGCACAAGGCCATAGCTCGGGAGCATGATCACCTGATCAGCCAGCGTGAGGTGTCACCTTCCAGTCATACTAAGGAGGATAATTCTGATGTGAATATCAAGCAAGGTGATGACATCTTGAATTCAATTGATGCACCTACCAATGAAGGTCAGGTGGGATACTCACCACCTGGAAGTGTTGATCGAGGGAGTCAAGAGAGACAGGAATATAGGGTGATCGATGCTGAGAATACCACACGGAAGAGGAAACGCCGTGAGGAAAATGATGAAAGAGGACTAGGTGTGACCTCACCAGTCAATCCAATTGATATGAGATCCTCAAGTGAACGTTTTCAGCCTAAACATGACATGCCACCTCCAGATTTTGAGGTTTTTGATAACGGTTATAGGAATGTGGAACCTACCTCTTCCTCACATACAGGGGGGATTAGAGGAGCCTATAGCGGGACCGAATATTGGCCAAGTGTTTCCAATCCCCTTTATGATTCTGGGATTACAGGCGTAGATGGACGCCATGACAGCCTTATGAGAGACACCGGATATAGACCCTATGTCAGGGAGGATGAGAGCAACCTTAGGGAACTAGGGACAAGGCAACATATTCGCCAATACGGGCTTCAGAATCCTAATAATGTGACTGCTAATTATCTATCATCTGTTCACGATCCTGCTTATAGCTACCATGAGGGATTAAGTTATCCAGCCCTTGGCTCATCATATGAGTCTCCTTATGCCATGAATGCACCAGCCATGCAGCGATATGCACCTCGTCTGGACGAATTAAACCACGTAAGGATGGATCCTCTGGGGTCTGAGCCTCCTCCTATAGTTGGACGTAGTGTGCCCCAACCTGGATATGGGAATCGGATGCCAGGTTTTGCAGGCGGTTCTCACCATCTCAATTCACGCCAGAATTCAGCAGACAGATTCAACCAGTAG 3591 0.4219 MASSDDEGESQPLSVSNYYFEDDKDVPVCFSVLPIVWSESESPVSKKVQVFLRGFADNGLQKIFMQVVAWRFDLSYVRPEISVLSKDGRWIKLEKPRKSYEETIRSILITIHFMGYVKRNPDSSAKSAWDSLSKNKEFRSYEVMPSQNDILNHMTLMGEAAKRDAGLAKSKLFLLVREDKHKLKIKKLSDEEIKDLARPGFITDDTDNDLIDEIDEDSDGEDGLFDSVCAICDNGGELLCCDGKCMRSFHANEEDGEESACASLGFSQKQVDDFQNFYCKNCEYNQHQCFACGTLGCSDKFSGAEVFKCASATCGFFYHPQCVAKLLHRVVEEAPDPKELERNIAEGGAFTCPTHYCCVCKGMEDKNEHDFHFAVCRRCPKSYHRKCLPRKIAFDDIEDEDIVTRAWEDLLPNNRILIYCLKHEIDDEFGTPVRDHIKFPNIKASVREVNDEDNEKPANKERVILDKNSIVSESLIGKKAALKFSNKQSGKMSSGKVVDKKSEKISGSNISRKKTNEASRTGLNESKRPLVPKETRKSEGAENKSSLGAKLFDFLQNRSEQINSGNKVNNVANNSRHVKPTKKLSSALPSLDEDAERRLVAMFKEATSSVTLEDVVKEHNFVSTHTTHSLRNVVEKTITLGKLEGSVEAVRTALRMLEGGHNVRDAAAVCGPDVLNQIFKWKDKLKVYLAPVLYGNRYTSFGRHFTQIEKLEGIVDKLHWYVQNGDTIVDFCCGANDFSILMKKKLEETGKRCSYKNFDLLPTKNDFNFEMRDWMTVQTEELPTGSKLIMGLNPPFGLKAALANKFIDKALEFRPKLMILIVPSETQRLDEKRRPYDLVWEDDRFLSGKSFYLPGSVDANDRQIEQWNVKPPPLYLWSRPDWTSKHKAIAREHDHLISQREVSPSSHTKEDNSDVNIKQGDDILNSIDAPTNEGQVGYSPPGSVDRGSQERQEYRVIDAENTTRKRKRREENDERGLGVTSPVNPIDMRSSSERFQPKHDMPPPDFEVFDNGYRNVEPTSSSHTGGIRGAYSGTEYWPSVSNPLYDSGITGVDGRHDSLMRDTGYRPYVREDESNLRELGTRQHIRQYGLQNPNNVTANYLSSVHDPAYSYHEGLSYPALGSSYESPYAMNAPAMQRYAPRLDELNHVRMDPLGSEPPPIVGRSVPQPGYGNRMPGFAGGSHHLNSRQNSADRFNQ 1196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02460 1196 MobiDBLite consensus disorder prediction 486 543 - -
Vimu2g02460 1196 MobiDBLite consensus disorder prediction 565 589 - -
Vimu2g02460 1196 MobiDBLite consensus disorder prediction 1152 1196 - -
Vimu2g02460 1196 Pfam Cytosine specific DNA methyltransferase replication foci domain 14 133 IPR022702 -
Vimu2g02460 1196 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 286 405 IPR013083 -
Vimu2g02460 1196 MobiDBLite consensus disorder prediction 896 1003 - -
Vimu2g02460 1196 MobiDBLite consensus disorder prediction 527 543 - -
Vimu2g02460 1196 MobiDBLite consensus disorder prediction 948 976 - -
Vimu2g02460 1196 CDD PHD2_NSD 288 355 - -
Vimu2g02460 1196 MobiDBLite consensus disorder prediction 896 917 - -
Vimu2g02460 1196 MobiDBLite consensus disorder prediction 494 510 - -
Vimu2g02460 1196 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 225 285 IPR013083 -
Vimu2g02460 1196 SMART PHD_3 228 283 IPR001965 -
Vimu2g02460 1196 SMART PHD_3 357 424 IPR001965 -
Vimu2g02460 1196 SMART PHD_3 288 356 IPR001965 -
Vimu2g02460 1196 MobiDBLite consensus disorder prediction 565 581 - -
Vimu2g02460 1196 PANTHER PHD FINGER-CONTAINING PROTEIN DDB_G0268158 5 911 - -
Vimu2g02460 1196 MobiDBLite consensus disorder prediction 1182 1196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02460 Vimu-Chr2 20364397 20379511 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02460 226 329 PHD Transcription Factor Family AT3G14980 32.692 1.28e-06 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02460 - - gmx:100803073 1892.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02460 2 20364397 20379511 Vimu1g00370 1 2189328 2198398 PCT