Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02444 ATGAGGGAGATTGAACCAAGGTATCAAGAGGTGTTGAGTAAGGACATAGCAGAAGCTGAGGATGATGGTGTGAAGGTTAGAGTTATAGCTGGGGAATCACTAGGGATAAAGTCTCCAATCTACACAATGACTCCAACCATGTTCTTGGATTTCTCTCTCAAACCTGGAGGACACTTGCAGCAACCTATACCAGAAACTTGGAATGCTTTTGTGTATATATTGGAAGGAGAGGGTATCTTTGGAAACATGAAATCTCAACCTTCAAATTCTCACCATATTCTTCTTCTTAGCCATGGTGATGGTCTAGAGGCATGGAACAAATCTTCTAAGCTCCTTAGGTTCATATTGGTTGGAGGAGAGCCTTTGGGAGAACCTTTAGTGCAATTTGGACCCTTTGTGATGAACACTCAAGAAGAGATTGACCAAACCATTAATGATTTTGAGAACTTTGCTAATGGATTTGAGAAAGCAAGAGATTGGAGATCTAAAAAGGAAATGAATTAA 504 0.4008 MREIEPRYQEVLSKDIAEAEDDGVKVRVIAGESLGIKSPIYTMTPTMFLDFSLKPGGHLQQPIPETWNAFVYILEGEGIFGNMKSQPSNSHHILLLSHGDGLEAWNKSSKLLRFILVGGEPLGEPLVQFGPFVMNTQEEIDQTINDFENFANGFEKARDWRSKKEMN 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02444 167 Gene3D Jelly Rolls 5 122 IPR014710 -
Vimu2g02444 167 PANTHER PIRIN-RELATED 2 164 IPR012093 -
Vimu2g02444 167 SUPERFAMILY RmlC-like cupins 2 162 IPR011051 -
Vimu2g02444 167 Pfam Pirin C-terminal cupin domain 48 152 IPR008778 -
Vimu2g02444 167 CDD cupin_pirin_C 45 121 - -
Vimu2g02444 167 PIRSF Pirin 1 161 IPR012093 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02444 Vimu-Chr2 20219201 20222366 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02444 4 163 Calmodulin-binding Proteins AT1G50590 66.667 2.10e-73 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02444 K06911 - gmx:100815529 309.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02444 2 20219201 20222366 Vimu2g02444 2 20219201 20222366 ECH
Vimu2g02444 2 20219201 20222366 Vimu1g00356 1 2093077 2093559 PCT