Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02441 GTGTTTGATTTCAGGTATGAGCTTGGGAGGCAGCCAGCAAACACAAAGCTGTCAAGCAACAAGACAATTAGGAGGATTAGAGTTCGTGGTGGGAATGTGAAGTGGCGTGCTTTGAGGCTTGATACTGGGAACTATTCTTGGGGGAGTGAGGCTGTTACTCGCAAAACAAGGATTCTTGATGTGGTGTACAATGCATCCAACAATGAGCTTGTTCGGACTCAGACGTTGGTCAAGAGCGCCATTGTTCAGGTCGACGCAGCGCCCTTCAAGCAGTGGTATCTGCAGCATTATGGCGTTGACATTGGTCGCAAGAAGAAGATTGCAGCTTCTGCCAAGAAGGAAGGAGAGGTACATGATGGTGAAGCTGCGACCGAGGAGGTGAAGAAGAGTAACCATGTCTTGAGAAAATTGGAAAAGCGGAAACAGACCCGGGTGCTTGATTCTCACATTGAAGAACAATTTGGGGGTGGTCGCCTTTTGGCTTGTATCTCATCCCGACCTGGCCAATGTGGCCGTGCTGATGGATATATATTAGAGGGCAAAGAGCTGGAATTTTACATGAAGAAGCTTCAAAAGAAGAAGGGCAAGGGCGCTGCATAA 600 0.4817 VFDFRYELGRQPANTKLSSNKTIRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKIAASAKKEGEVHDGEAATEEVKKSNHVLRKLEKRKQTRVLDSHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQKKKGKGAA 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02441 199 CDD Ribosomal_S8e_like 5 178 - -
Vimu2g02441 199 Gene3D - 11 142 - -
Vimu2g02441 199 Gene3D - 143 196 - -
Vimu2g02441 199 Coils Coil 120 140 - -
Vimu2g02441 199 FunFam 40S ribosomal protein S8 11 142 - -
Vimu2g02441 199 PANTHER 40S RIBOSOMAL PROTEIN S8 5 196 IPR001047 GO:0003735|GO:0005840|GO:0006412
Vimu2g02441 199 Pfam Ribosomal protein S8e 6 178 IPR022309 -
Vimu2g02441 199 NCBIfam ribosomal protein eS8 5 180 IPR001047 GO:0003735|GO:0005840|GO:0006412
Vimu2g02441 199 FunFam 40S ribosomal protein S8 143 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02441 Vimu-Chr2 20201345 20203089 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02441 5 187 Cytoplasmic Ribosomal Protein Gene Family AT5G59240 83.696 4.36e-109 309
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02441 K02995 - gmx:100527325 343.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02441 2 20201345 20203089 Vimu2g02441 2 20201345 20203089 ECH