Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02439 ATGGCAGAAAGTGCAGTGTCTTTTGCGAGTAAGCATGTGCTTCCAAAATTTTTGGAAGCTGTAAAGATGCTGAGAGATCTACCAAAAGAAGTAGCAGAAGTTGTAGATGAACTAGAAAGCTTTCAAGATTTCATCCATGATGCAGATAAAGTGGCTGAAGCTGAAGAGGATAAAAATAGGCGTGATAGAATAAGAAAAAGGTTGATGAAGCTGAGAGAAGCAGCTTTTCGCATGGAAGATGTAATCGATGACTATGTGATATGTGACGAAAAACAACCTGAAGAAGATCCTCGGTGTGCAGCTTTACTCTGTGAGACTGTTGAAATCATCAAAACTCAAATCCATCGCCTGCAAATAGCGTATCAGATTCAGGATGTTAAGTCACTTGTTCGTGCCGAAAGAGATGGCTTCAAAAACCATTTTCCTATAGGACCAAGATCAGACGGTTCTAGAAGAAGTGAAAACTTCACATGGCAGAAACTTCGAATCGATCCTCTGTTTATTAAGGAAGACGAGGTTGTTGGATTTGAAGGCCCTATACATACATTGAAAAAATGGTTGACAGAGGGAAGAAAAGAACGCACTGTCATCTCTATTGTAGGAATGGCAGGATTGGGAAAAACCACTCTTTCTAAGCAAGTTTTTGACAGGGTACATACAGACTTTGAGTGCCATGCGTTGATCACAGTGTCTAGATCCTACACTGTTGAAGAGTTGCTGAGGGATATGACGAACAAGCTTTGCAAAGAAAGAATGGAGGATCCTCCTCGGGATGTTGCAACTATGAATCAAATGTCGTTGATAGAAGAAGTAAGAAACCGCTTGTGCAATAAGAGGTATGTTGTCTTGTTTGATGATGTATGGAATGAAACATTTTGGGATGACATTGAATTGGCTCTGATTGATAATAAAAATGGAAGTAGGATATTAATCACTACCCGGGATGAGAAGGTTGTGGAGTTCTGTAAAAAAGCTTTATTTTTTGAGGTGCATAAGTTACAGCCTTTAAGTAAAGCAAAATCATTGGAGTTGTTATGTAAAAAGGCGTTTGGGTATGGTTTTGATGGATGTTGTCCAAAAGATTATGAAGCAGTAGGTCTGGACATTGTTAAGAAGTGTGAGTGTTTACCTTTAGCAATTGTGGCCATTGGTAGTCTTTTATATAGAAAATGTAAAAGTCCATCTGAATGGCACCTTTTTAGTCAAAATCTAAGTTCGGAGTTGCAGAGCAATTCCGAGTTACACAGTGTAACAAAAATTTTAAGTTTGAGTTATGATGATTTGCCACATAATCTCAAGTCATGTTTGTTGTATTTTGGAATGTATCCTGAAGATTACGAAGTTAAATGTGGTAGATTAATTAAGCAGTGGATAGCTGAAGGGTTTGTGAAACATGAAAGTGGAAGAAATCTAGAAGAAGTTGGACAACAACATTTAATGGAGTTGATTAGTCGAAGCTTGGTACTAGTAGCATCATTTACTACAGATGACAAAGCTAAAACATGTCGTGTTCATGACTCAATACATGAAATGATCCGTGAAAAAATTAAGAATACGGGATTTTGTGAGTATATTGATGAGCATAATCATTTGGAGTCAAGTGGTATCATTCGACGCTTAACAATAGCAAGAAATTCCAATGGTTTAAGTGGATCCATAGAAGAATCACAATATGTTCGGTCAATTCTAATTTTTACAAATGAAGTGTCATCTAAAGACTTCACCAGACGCTTGCTTGCAAAATACATGCGGTTGAGGGTGCTCGATTTTGGATATGCTCCATTATATGATGTTCCTGAAAATTTGGGGAGTTTAATCCACTTAAAGTATCTAAGCTTCCGGGGTACATTCATAAGTGGTTTTCCAAAATCCATTAGTAAGCTCCAGAACTTGGAGACTCTAGATGTACGAGCACTTGGGGAGATTGAGGTACCAAAGGAGATTACCAAGCTAAGAAAGCTACGTTGTCTATTGGGTAACCCAATATCTTCCATTGCGGTGAAGGATAGTCTTGGGAGCATAACATCCCTAGAAAAGATGCATGTATTGATAATAGATCCAGATGGAGTAGTTATTAGAGAGCTTGGAAAGCTAAAGCAATTAAGGGATCTGAGGCTTACTATGCTTAGGGGAGATCAAGCTGATACTCTTTGTTCCTCAGTAAACGAGATGCCACTCTTGGAGCGACTGCATATCTCTTTAAAATATGGGACTGAAGCACTTGACTTGCACATTAAGTTATCCTTGTCTAAACTAAGGAAGCTTCACCTGTATGGCAGTTTAAAAGAGTTCCCAAATTGGATTCCGCGGCTCCAAAATCTTGTGAAATTGTCTTTGGTTGAATCCAGGTTAACTAACATTCGATTGACAGATCTTGGAAGTATGCCAAATTTGTTGTTGCTCTCTTTTGACTCTAATTCTTATGATGGAGAAACTTTACATTTTGAAAATGGAGGATTTCAGAAACTAAAGGAACTACAGCTCAATGGTTTGCAGCAATTGAGCTCCATCCTTATTGATAGTGGAGCACTGGAATCTTTGGAAAAGCTTCAGATAATGAGTATTCCCCAACTGAAGGCAGTACCCTCTGGCATTCAACACTTAAAGAAACTCCAAGTTCTCGACATCTTATATATGCCGACCGAATTTCAACAGAGGATTGACCCCAACGGAGGAAAAGAACATTGGATGATCAAACATGTGCCCGATGTACATTTTGTCACGAAAAATCGTGCTTTGCTATTGGCTGAGAGAGCAGCTGAAATTTTTTCTTCGCGGTTATAG 2784 0.3858 MAESAVSFASKHVLPKFLEAVKMLRDLPKEVAEVVDELESFQDFIHDADKVAEAEEDKNRRDRIRKRLMKLREAAFRMEDVIDDYVICDEKQPEEDPRCAALLCETVEIIKTQIHRLQIAYQIQDVKSLVRAERDGFKNHFPIGPRSDGSRRSENFTWQKLRIDPLFIKEDEVVGFEGPIHTLKKWLTEGRKERTVISIVGMAGLGKTTLSKQVFDRVHTDFECHALITVSRSYTVEELLRDMTNKLCKERMEDPPRDVATMNQMSLIEEVRNRLCNKRYVVLFDDVWNETFWDDIELALIDNKNGSRILITTRDEKVVEFCKKALFFEVHKLQPLSKAKSLELLCKKAFGYGFDGCCPKDYEAVGLDIVKKCECLPLAIVAIGSLLYRKCKSPSEWHLFSQNLSSELQSNSELHSVTKILSLSYDDLPHNLKSCLLYFGMYPEDYEVKCGRLIKQWIAEGFVKHESGRNLEEVGQQHLMELISRSLVLVASFTTDDKAKTCRVHDSIHEMIREKIKNTGFCEYIDEHNHLESSGIIRRLTIARNSNGLSGSIEESQYVRSILIFTNEVSSKDFTRRLLAKYMRLRVLDFGYAPLYDVPENLGSLIHLKYLSFRGTFISGFPKSISKLQNLETLDVRALGEIEVPKEITKLRKLRCLLGNPISSIAVKDSLGSITSLEKMHVLIIDPDGVVIRELGKLKQLRDLRLTMLRGDQADTLCSSVNEMPLLERLHISLKYGTEALDLHIKLSLSKLRKLHLYGSLKEFPNWIPRLQNLVKLSLVESRLTNIRLTDLGSMPNLLLLSFDSNSYDGETLHFENGGFQKLKELQLNGLQQLSSILIDSGALESLEKLQIMSIPQLKAVPSGIQHLKKLQVLDILYMPTEFQQRIDPNGGKEHWMIKHVPDVHFVTKNRALLLAERAAEIFSSRL 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02439 927 PANTHER DISEASE RESISTANCE PROTEIN RP 33 851 IPR044974 GO:0006952
Vimu2g02439 927 FunFam Probable disease resistance protein At1g63360 425 514 - -
Vimu2g02439 927 Pfam NB-ARC domain 179 427 IPR002182 GO:0043531
Vimu2g02439 927 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 439 IPR027417 -
Vimu2g02439 927 PRINTS Disease resistance protein signature 196 211 - -
Vimu2g02439 927 PRINTS Disease resistance protein signature 626 642 - -
Vimu2g02439 927 PRINTS Disease resistance protein signature 373 387 - -
Vimu2g02439 927 PRINTS Disease resistance protein signature 274 288 - -
Vimu2g02439 927 CDD RX-CC_like 2 128 IPR038005 -
Vimu2g02439 927 Pfam Rx N-terminal domain 5 94 IPR041118 -
Vimu2g02439 927 Gene3D - 335 424 IPR042197 -
Vimu2g02439 927 FunFam Probable disease resistance protein At1g61300 160 325 - -
Vimu2g02439 927 SUPERFAMILY L domain-like 503 883 - -
Vimu2g02439 927 Gene3D - 165 327 IPR027417 -
Vimu2g02439 927 Gene3D - 425 516 IPR036388 -
Vimu2g02439 927 Gene3D Ribonuclease Inhibitor 543 890 IPR032675 -
Vimu2g02439 927 Gene3D - 4 120 - -
Vimu2g02439 927 Coils Coil 54 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02439 Vimu-Chr2 20188727 20191510 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02439 172 394 WRKY Transcription Factor Family AT5G45050 26.009 1.77e-12 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02439 K13457 - gmx:100806153 1067.76