Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02435 TCCTCTGTCACAGGTTGTTGTGTTAACAACATGGCTAAGCTTTCCCCTCTTGAAGAGACCCTTCTAAACGGTGACTCCAGTAAGACAAAAGGAAATGAAAATTTAACCCAAAATTCAAATGCTGGATTTTTCAATATTCTCACTTTCTCGTGGATCAGTCCATTAATAACAGTAGGCAATGAGAGGACTTTAAACCATGAAGACATCCCACGTCTTGGTACTGATGACAGTGCCTATGGGATTTTTCAAACTTTTAGAAGCAAATTAGAGTCAGAGTGTGGTAGTGTTAGGAATGTGACAACTCTTAAGCTGGCCAAGGTTTTATTCTTGTCCACATGGCAAGGGATCTTCTTCTCAGGTTTATTTGCATTCTTGTCTACGTGTGCTTCTTATGTAGGACCCTTTCTTATTGATATCCTTGTTCAGTACCTCAACGGAGAACACATGTTTAAAAATGAAGGATATGTTTTGACTGCGGCATTTGTTGCTGCAAAGCTTTTGGAGAGTCTTGCAGACAGGCACTGCATGTTCAGGTTCCAGCAGGTTGGGGTTCAAATTCAATCAAAGTTGGTGGCAATGATCTATGCTAAAGGTTTGACTCTTTCATGTCAGTCAATGGAGGTTCATAGCACAGGGGAAATTATCAACTTAATGACTGTTGATGCTTCAAGGATTGGAGAATTTTGTTGGTATATGCATCAACCCTGGATGTGTGTTTTGCAAGTTGCTCTGGCCTTGTTGATTCTCTATAGAAGTGTAGGGGTTGCTTCAATAGCTGCTCTTGGTGCCACTGTAATTGTGATGTTGCTAAACCATCCCGTGGCATCATTGCAAGAAAAGTTTCAAGGCAAGGTAATGGAGTCCAAAGATAAAAGAATGAAGGCTACGTCTGAGATTCTTAAGAATATGAGGATTCTAAAACTGCAAGCATGGGAGATGAAGTTCTTATCAAAGATTATTCAGCTTAGGAAAATAGAGGAGATATGGCTGAAGAAATTTCTCGCTGGCTCAGCAGTTGTTAGATTTGTCTTCCATAATGCCCCCACTTTTATCGCAGTGGTTACTTTTGGTACTTGTGTTCTTGTGGGCATCCCACTTGAATCAGGAAAGGTCTTATCAGCACTTGCAACATTCCGAATTCTTCAAATGCCTATCTACGGTCTTCCTGACACGATTACAATGATTGCACAAAGTAGGATTTCTCTTGAAAGGATTGCATCATTTCTTCGTTTAGAAGAGTTGCAGACTGATGTAGTAGAGAAGCTTCCTTGGGGTAGTTCTGATAAGGCAGTTGAATTAGTAGATGGAAATTTCTCATGGGATTTATCTTCCCCTAATCCAACATTGAAAAACATCAATCTCACAGTTTTTCATGGTACGAGGGTTGCTGTATGTGGTACTGTTGGATCAGGAAAGTCTAGTTTACTTTCTTGCATTATAGGGGAAGTACCAAAGATATCTGGGAGTCTGAAAATATGTGGAACAAAGGCCTATGTTTCTCAATCACCATGGATACAGAGTGGCAAGATAGAAGAGAACATATTGTTTGGTAAAGAGATGGACAGGGAAAAGTATGAGAGGGTGCTAGAAGCATGTTCCTTGAAAAAAGACCTTGAGGTTCTACCATTTGGAGATCAGACCATTGTTGGAGAGAAAGGGATCAATTTGAGTGGTGGACAGAAGCAAAGAGTGCAAATAGCGCGTGCTATATATCAAGATGCTGATATATATCTTTTTGATGATCCATTCAGTGCGGTGGATGCTCATACGGGATCTCATCTTTTTAAGGAGTGCTTGCTTGACCTTTTAAAATACAAAACTGTGATATACGTAACCCATCAAGTAGAATTCTTACCTGATGCTGATCTAATACTGGTCATGAGAGAAGGAAGAATAACTCAATCGGGAAAATTCAATGACATTCTCAGGTCAGGGACTGATTTTATGGAACTTGTAGATGCACACAAAGCAGCTTTATCTTCATCAATTAAGTCCCTAGAGAGAAGACCAACATTTAAACAACCAAGTTCCACCAAGGAGAACAAAAATTCATTAACTGATTTTGAATATGAGGAAAATGAGGAAAGCATACATGATAAGAAGGATAATAAAGATGACACAAATGAATCAAAAGGACAACTTGTTCAAGAAGAAGAACGGGAAAAGGGTAGAGTTGGGTTTAATGTATACTGGAAATACATCACAACAGCTTATGGAGGAGCTCTTGTGCCCTTCATATTACTAGCTCAGATACTCACCGTGGGTTTTCAAATTGCAAGCAATTACTGGATGACAGTGGCAACTCCTGTTTCAGGAACTGCTGAACCTGATATTGGAAGCCTTACACTTATGCTTGTCTATGTCGCATTGGCAATCGGAAGTTCAATTTTCACCCTTGCCAGAGCATTTATTGCTGTGATAGCTGGATATAAAACAGCCACTGTGCTCTTCAATAAAATGCATTTCTGTGTTTTTCGAGCACCAATATCTTTTTTTGATGCCACCCCAAGTGGTCGAATCCTGAATAGAGCTTCAACAGACCAAAGTGAACTAGATATGAGCATTCCATCATTATTATGGGCAATTACCCTTAATTTGATTCAAATCTTGGGAAATATTGTTATAATTTCTCAAGCTGTATGGCAGGTCTTTATAGTATTGATTCCTGTAATAGCAGCATGCATATGGTACCAGCGATACTATTCTGCATCTGCAAGGGAACTGGCACGATTAGTTGGTACATGTCAAGCTCCAGTTATACAACATTTTTCAGAAACAATTTCAGGATCAACAACCATAAAATGTTTTGAGCAAGAATCAAGATTCAATGACATAAATATGAAATTGATAGACAGATATTCCCAACCTAAATTATACAGTGCTGCTGCAATTGAATGGTTGAATTTCAGATTGGATATTTTATCCACTCTCACATTTGCCTTCTGTTTGGTTTTCTTGATATCTTTTCCAAACTCATTCACTGCTCCAGGCATTGCTGGACTGGCTGTGACATATGGACTTAATCTAAACTCTCTACAGACTAACATAATCTGGTTTCTTTGCACTTTGGAGAACAAAATTATATCTGTTGAAAGAATACTTCAATACACATCTCTCCCAAGTGAAGCTCCTCTTGTGATTAAAGACAACCAGCCAGAATATTATTGGCCATCATTTGGTGAGGTTCATATCCGGGATCTACAGGTTCGATATGCTCCTCACTTGCCTGTTGTTTTACGAGGCCTTACTTGCACTTTTACTGCTGGATCAAAAACTGGTATTGTGGGAAGAACAGGAAGTGGAAAAACAACTCTAGTGCAAACACTTTTCCGGCTTGTTGAACCTGTTGCGGGACAAATATTGATAGATAGCATTAACATCACTTCGATTGGAATTCATGATCTGCGGTCCAGACTAAGCATTATTCCTCAAGAGCCAACAATGTTTGAAGGGACTGTGAGAAGCAACCTGGATCCACTGGAAGAGTACACAGATGAACAGATTTGGCAGGCTTTAGAGATGTGCCAACTTGGAGATGAAGTAAGGAAAAAAGAAGGGAGACTTGACTCCATAGTTACTGAAAATGGAGAAAATTGGAGCATGGGTCAAAGGCAATTGGTCTGCCTAGGCCGTGTTCTACTGAAGAAAAGCAAGATCTTGGTGCTTGATGAAGCTACTGCATCTGTTGATACAGCCACAGATAATATTATTCAGCAAACAGTTAAGCATCATTTTGCAGAATGCACAGTCCTCACCATTGCTCATAGGATAACTTCAATCATTGACAGTGACATGGTTCTGTTTTTAAATCAAGGGTTGATTGAAGAATATGATTCACCAAAGAAACTGCTTAAGAACAAATCTTCATCTCTTGCTCTACTGGTTGCTGAATACACAAGGAGATCAGACTCTGGTTTTGGAAATTAA 3927 0.3939 SSVTGCCVNNMAKLSPLEETLLNGDSSKTKGNENLTQNSNAGFFNILTFSWISPLITVGNERTLNHEDIPRLGTDDSAYGIFQTFRSKLESECGSVRNVTTLKLAKVLFLSTWQGIFFSGLFAFLSTCASYVGPFLIDILVQYLNGEHMFKNEGYVLTAAFVAAKLLESLADRHCMFRFQQVGVQIQSKLVAMIYAKGLTLSCQSMEVHSTGEIINLMTVDASRIGEFCWYMHQPWMCVLQVALALLILYRSVGVASIAALGATVIVMLLNHPVASLQEKFQGKVMESKDKRMKATSEILKNMRILKLQAWEMKFLSKIIQLRKIEEIWLKKFLAGSAVVRFVFHNAPTFIAVVTFGTCVLVGIPLESGKVLSALATFRILQMPIYGLPDTITMIAQSRISLERIASFLRLEELQTDVVEKLPWGSSDKAVELVDGNFSWDLSSPNPTLKNINLTVFHGTRVAVCGTVGSGKSSLLSCIIGEVPKISGSLKICGTKAYVSQSPWIQSGKIEENILFGKEMDREKYERVLEACSLKKDLEVLPFGDQTIVGEKGINLSGGQKQRVQIARAIYQDADIYLFDDPFSAVDAHTGSHLFKECLLDLLKYKTVIYVTHQVEFLPDADLILVMREGRITQSGKFNDILRSGTDFMELVDAHKAALSSSIKSLERRPTFKQPSSTKENKNSLTDFEYEENEESIHDKKDNKDDTNESKGQLVQEEEREKGRVGFNVYWKYITTAYGGALVPFILLAQILTVGFQIASNYWMTVATPVSGTAEPDIGSLTLMLVYVALAIGSSIFTLARAFIAVIAGYKTATVLFNKMHFCVFRAPISFFDATPSGRILNRASTDQSELDMSIPSLLWAITLNLIQILGNIVIISQAVWQVFIVLIPVIAACIWYQRYYSASARELARLVGTCQAPVIQHFSETISGSTTIKCFEQESRFNDINMKLIDRYSQPKLYSAAAIEWLNFRLDILSTLTFAFCLVFLISFPNSFTAPGIAGLAVTYGLNLNSLQTNIIWFLCTLENKIISVERILQYTSLPSEAPLVIKDNQPEYYWPSFGEVHIRDLQVRYAPHLPVVLRGLTCTFTAGSKTGIVGRTGSGKTTLVQTLFRLVEPVAGQILIDSINITSIGIHDLRSRLSIIPQEPTMFEGTVRSNLDPLEEYTDEQIWQALEMCQLGDEVRKKEGRLDSIVTENGENWSMGQRQLVCLGRVLLKKSKILVLDEATASVDTATDNIIQQTVKHHFAECTVLTIAHRITSIIDSDMVLFLNQGLIEEYDSPKKLLKNKSSSLALLVAEYTRRSDSGFGN 1308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02435 1308 SUPERFAMILY ABC transporter transmembrane region 113 413 IPR036640 GO:0005524|GO:0016020
Vimu2g02435 1308 Gene3D - 413 672 IPR027417 -
Vimu2g02435 1308 FunFam ABC transporter C family member 5 416 663 - -
Vimu2g02435 1308 CDD ABCC_MRP_domain2 1060 1280 - -
Vimu2g02435 1308 Gene3D ABC transporter type 1, transmembrane domain 91 412 IPR036640 GO:0005524|GO:0016020
Vimu2g02435 1308 Gene3D ABC transporter type 1, transmembrane domain 705 1043 IPR036640 GO:0005524|GO:0016020
Vimu2g02435 1308 FunFam ABC transporter C family member 3 1045 1297 - -
Vimu2g02435 1308 MobiDBLite consensus disorder prediction 684 719 - -
Vimu2g02435 1308 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 745 1025 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu2g02435 1308 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 431 654 IPR003439 GO:0005524
Vimu2g02435 1308 MobiDBLite consensus disorder prediction 668 683 - -
Vimu2g02435 1308 CDD ABC_6TM_ABCC_D1 118 405 IPR044746 GO:0140359
Vimu2g02435 1308 CDD ABCC_MRP_domain1 431 631 - -
Vimu2g02435 1308 Pfam ABC transporter 1080 1227 IPR003439 GO:0005524
Vimu2g02435 1308 Gene3D - 1045 1296 IPR027417 -
Vimu2g02435 1308 SUPERFAMILY ABC transporter transmembrane region 743 1044 IPR036640 GO:0005524|GO:0016020
Vimu2g02435 1308 Pfam ABC transporter 449 583 IPR003439 GO:0005524
Vimu2g02435 1308 CDD ABC_6TM_ABCC_D2 743 1037 IPR044726 GO:0140359
Vimu2g02435 1308 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1051 1288 IPR027417 -
Vimu2g02435 1308 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1062 1296 IPR003439 GO:0005524
Vimu2g02435 1308 Pfam ABC transporter transmembrane region 116 384 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu2g02435 1308 Pfam ABC transporter transmembrane region 745 987 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu2g02435 1308 MobiDBLite consensus disorder prediction 668 719 - -
Vimu2g02435 1308 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 39 1295 - -
Vimu2g02435 1308 FunFam ABC transporter C family member 10 100 413 - -
Vimu2g02435 1308 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 117 397 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu2g02435 1308 ProSitePatterns ABC transporters family signature. 556 570 IPR017871 GO:0005524|GO:0016887
Vimu2g02435 1308 FunFam ABC transporter C family member 5 706 1043 - -
Vimu2g02435 1308 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 428 653 IPR027417 -
Vimu2g02435 1308 SMART AAA_5 1088 1273 IPR003593 GO:0016887
Vimu2g02435 1308 SMART AAA_5 458 631 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02435 Vimu-Chr2 20147588 20152623 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02435 431 684 Calmodulin-binding Proteins AT2G36910 30.657 3.39e-26 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02435 - K05666 gmx:106794105 2205.25