Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02434 ATGGCAGAGCAAGTAGTGTTAGCGGCTGGTGAATGTATTCTGAAATTACTTTGGGAAGCCGTCAAAAGGCTGAAAAATCTCCCAGACGATGTTGGCAAGATGCGAGATGAACTTGACGAGTTGAAAATCAATTTGGAGGATAAAGAGGCTGATGGTGAAAATGTTGCCACTATGCGTAATAAAAAGAAGCAAGCTTTGAAAGCAACCTTTCTGACGGAAGATGTGATTGACGAGTATTTGATACTTGTTGAAGAAAAGCAACCTCAAGATGATCGTGGATGGGCAGCGTTCCCCTCTAAGGCCGCTTACCACATCCAAACTCTCATCCCTCGATTTCAAATATCATATAAGATTGAGAGTAACTTATCAGTTGTTCGTAGGACAAACGAGAGTTTCAGAAATAATCGTCCACAATCAACACAAAACAACAATGTCACGTTTAATCAACTTCGAATGGAGGGTCTCTTTATGGAGGAACAGGAGGTTGTTGGACTTGCTGGACCTACAGAGATATTGAAAGATTGGTTAAAAAATGGACAAGAAGAACGCACTGTGATTTTTGTTGTGGGTGTTCCAGGAGTTGGAAAAACCACTCTTGCCAAGCATGTTTTTAACAAGGTCTGTAGCGACTTTGAGCACCATGCATTCTTCACAGTGTCTCAGTCAAATACTGTAGAAGAACTTTGGGGGAGTATGTACGAACGTTACATGAAAAGCAAGCCACCTTCCGATAATTGTATTTTGATAGAAGAAGTCAGAGGTTACTTGCGTGGGAAGAGGTATGTTCTCTTGTTTGATGACGTATGGGAGGAAAATTTTTGGGATGACATTAAAAAGGTTTTGATTGATAATAAAAATAAAAGTAGGATAATAATCACAACAAGGAAAGAGAATGTTGCGAACTCTTGTAGGAATTCTCCTTTTTTTAAAGAATACAAGCTTGAAGAACCTTTAACTGAAGAAGAATGTTTGAGATTGCTCCATAAGAACGCAGGTTATAGTTCTGATTGTCCAGAAGAACTTAAAGATATATCTCTTGAAATTGTTAGAAAGTGTAGAGCTTTACCTCTAGCAATTGCGGTCGCTGGAGGAGTCTTGAAAGAAAAAGATAGAAGTGCACATGAGTGGGGACTGTTTAGTGAAGAGTTGAATAGGAATCCTGACTTAAATATAACAAAAATCGTAGGTTTAAGTTATGATAATTTGCCGATCCATCTCAGGTTATGTTTATTGTATTTCGGAATGTATCCGAAAGATTATGAAATTAAATCTGGGAGATTGGTTAGGCAATGGGTGGCTGAAGGATTTGTTACCTATGAAGACCGAAAAACTTTAGAAGAAGTTGCACATGGATATTTATTATACTTAGTCGAGAGAAATTTGGTGCAAGTGACATCATATCCCAGGAAAGAAAAAGTGAAAAAATGTCGTGTTAGTGACTCAATACACGATATGATCCTTACAAAAGTGAAGGATACATGTTTTGGCAAGTATATTGGCGGTGGACATGATCAATCTCAGTCAAGTGAGTTGGTTCGACGTCTGACAATTGAAACCAACACTGATTTAAATAGGCGAATTAAAAGATCACTCATTCGGTCAATTATAATCATTACAGGAAAACAAGAAAAAGCATGGTCTGTCGATTTGGAAAGTAAAATTCTTAAAGATGAAATGCCATTGAAGGTACTTGATTTTGAGGATTGTGGATTGCTTTGTGTTCCTAAAAAGTTGGGGAATTTAATCTACCTGAGGTATTTAAGCTTTAGGGGGACGCAGATAAAAGTTCTTCCAAAATCCATTGGTAAGCTCGTGAACTTGGAGACCTTGGATATACGACAAACGCAAGTGTGTGAGGTGCCGAAGGAGATCAGAAAGCTTAGAAAGTTACGGCATCTTCTGACACCTGACTCTGTGTCTTCTTCAATTCAATGGAAGGATATTGGAGGCATGACAATGCTGGAAAAGATACCACAGGTGCGTATGGAGGATGATGGAGTGGCCATTAGAGAGGTAGGGAAGTTAAAGCAGTTAAGAAATCTGAGGGTGCTTTGTTTCGACGGAGAGCACATTACTTTACTTTTCTACTCAATCAATGAGATGGAACACTTGCAAGCACTACGCATTGAAAAATCTAATGATGGCATTGTAGTTGACTTGAACACTACGTCAACAATATCTGAACTTAGGAAGCTTTTCCTTGATTTGAAGTTAGAAAGGTTACCAAATTGGATTCCCCAACTCCATAATCTTGAGAGATTGACCTTGCGCCACTCTGACTTAACCAATGATCCCTTGGAATCACTAAAAGATATGCCTAGTTTGTTGGTTCTCTCTTTATCCCACGCTTATGAAGGTCAAACTTTGCATTTTCAATCTGGAGGGTTCAAGAAACTAAGAAAGCTAAATCTGGAACATCTTTGGAACTTGAATTCGATCCTTATTGATGAGACAGCTCTTCAGTGTTTGGAACATCTTAATTTGAAAGGCCTCGATGAACTCAGAAAAGTCCCCGATGGCATTAAACATCTGAAGAAACTTAAATTTCTTCTTGTCCCTTCTATGCCAACTCAATTTGTTCAGGAAATTGATCGCATCTGGAGAATCAATTATGGCTATATGTCATTCGCGACAAAAGTGGCAGAAACTTCAATTCCCTTTGCTCGTCGGTATTTGCCACCAAAACTTTTTGAAGCTTTGAAAATGATGAGAGATTTGTCAAAAGAAGTTGCAGAGATTACAGATGAACATGGAAGCTTGCTAGATTTCATCGATGATGCAGATAAACTGGCTGATGCTGAAGAAGATGTCAAAAGGCGTGATAGAATGAAGGAAAGGTTGATGAGGCTGAGAGAAGCAACTTTTCGCACGGAAGATGTGATTGATGAATATTGCATCCGTGTTAAAGAGAAACAACCTCAACATGGTCCTCGATGGGCAGCTTCACTCTCTAAGACTGTCCACAGCATCAAAACCTTCATCCTTCGACTTCAAATAGCATGTAAGATTCAGGATGAAAAATCAGTTGTTCGTGATGAAAAAGTTGGTTTTGAAAGCCAATATTTTTCAGAAAAAATACTAAACAGTTCTAGAGAAAACAAAAATGTCACGTTTAATCAACTTCGAATGGATCCTCTCTTTATGAAGGAAGAGGAGGTTGTTGGACTTGCTGGACCTACAGAGAGATTGACAGATTGGTTAACAAATGGACGAGAAGAACGCACTGTGATTTCTGTTGTAGGTATTGCAGGAGTTGGAAAAACCACTCTTGCCAAGCATGTTTTTGACAGGGTCCATCGCTACTTTGAGTGCCATGCATTGATCACAGTCTCTCAATCCTACACTGTAGAAGAATTGTTGAGGAATATGGTACGCAAACTTTGCAAAGAGAGAAAGGAAGATCCACATTGTAAAATTTCTACGATGGATAGAGGCTCCTTGATTGAAGAAGTCAGAGATCGCTTGCACCAGAAGAGGTATGTTGTCTTATTTGATGACGTATGGAATGAAAAGTTTTGGGATGACATTCAATCTGCTTTGATTGATGATAATAACAAAAGTAGGATAATAATCACTACAAGGCACGAGAAGGTTGCGGTCTTCTGTAAGAAATCTTCTTTTGTTGAAGTGCATAAGCTAGAAGAGCCCTTAAAAGATGAATCTTTCAGATTGTTCTGTAGAAAGGCATTTAAGTATGGTTCTGCCGGAGGTTGCCCAGAAGAACTCAAAGACTTATCTCTTGAAATTGTTAGGAAGTGTAAAGGTTTACCTCTGGCAATTGTGGCCATTGGTGGCGTGTTGTCCCAAAAAGATGAAAATGCAAAAGAATGGAGACTGTTTAGTCAAAATCTAAGTTCAGAGTTGAAGAGGAATCCTGACTTAAATATTATAACAAAAATTATAGGTTTAAGTTATGATAATTTGCCGAGCCATCTCAGGTTATGTTTATTGTATTTCGGAATGTATCCAAAAGATTATGAAATTGAATCTGAGAGACTGGTTAGGCAATGGGTGGCTGAAGGATTTGTTACCCATGAAGAGGGAAAAACTTTAGAAGAAGTTGCACATGAATATTTATTAGGGTTGGTCCGTAGAAGTTTGGTGCAAGTGTCATCATTTTCCATGGAAGGAAAAGTGAAAAAATGCCGTGTTCATGACTTAATACACGATATGATCCGTACAAAAATGAAGGATAAATGTTTTGGAGAGTATGTTGGCGGAGGGCATGATCAATCTGAGACAAGTGAGTTGGTTCGACGTCTGACAATTCAAGCCAACAATGATTTAAATAGACGTATTAAAAGATCACACATTCGGTCAATTATAGTCATTCCAGGAAAAAAAGAAGAACTATTGTCTGTCCACTTGGTAAGGAAAATTCCTACAGATTATATGCTATTGAAGGTACTTGATTTTGAAGATTGTGGATTACTTTGTGTTCCTAAAAAGTTGGGGAATTTAATCTACCTGAGGTATTTAAGCTTTAGAGGGACGCAGATAAAAGTTCTTCCAAAATCCATAGGTAAGCTCGTGAACTTGGAGACCTTGGATATACGACAAACGCAAGTGTGTGAGGTGCCGAAGGAGATCAGAAAGCTTAGAAAGTTACGGCATCTTCTGACACCTGACTCTGTGTCTTCTTCAATTCAATGGAAGGATATTGGAGGCATGACAATGCTGGAAAAGATACCACAGGTGCGTATGGAGGATGATGGAGTGGCCATTAGAGAGGTAGGGAAGTTAAAGCAGTTAAGAAATCTGAGGGTGCTTTGTTTCGACGGAGAGCACATTACTTTACTTTTCTACTCAATCAATGAGATGGAACACTTGCAAGCACTACGCATTGAAAAATCTAATGATGGCATTGTAGTTGACTTGAACACTACGTCAACAATATCTGAACTTAGGAAGCTTTTCCTTGATTTGAAGTTGGAAAAGTTGCCAAATTGGATTCCCCAACTCCATAATCTTGAGAGATTGACCTTGCGCCACTCTGACTTAACCAATGATCCATTGGAATCACTAAAAGATATGCCTAGTTTGTTGGTTCTCTCTTTATCCCACGCTTATGAAGGTCAATCTTTGCATTTTCAACCTGGAGGGTTCAAGAAACTAAGAATGCTAAATCTCGAACATCTTTGGAACTTGAATTCCATCCTTATTGCTGAGACAGCTTTGCAGTCTTTGGAACATCTTAAGTTGAAAGGCCTCGATGAACTCCGAACTGTCCCCGATGGCATTCAACATCTGAAGAAACTTAAATTTCTTCTTGTCCCTTCTATGCCAACTCAATTTGTTAAGGAAATCGATCGCATTGGTAAAAACCAGCACTGGAACATCAATTATGGCTATATGTGA 5358 0.3876 MAEQVVLAAGECILKLLWEAVKRLKNLPDDVGKMRDELDELKINLEDKEADGENVATMRNKKKQALKATFLTEDVIDEYLILVEEKQPQDDRGWAAFPSKAAYHIQTLIPRFQISYKIESNLSVVRRTNESFRNNRPQSTQNNNVTFNQLRMEGLFMEEQEVVGLAGPTEILKDWLKNGQEERTVIFVVGVPGVGKTTLAKHVFNKVCSDFEHHAFFTVSQSNTVEELWGSMYERYMKSKPPSDNCILIEEVRGYLRGKRYVLLFDDVWEENFWDDIKKVLIDNKNKSRIIITTRKENVANSCRNSPFFKEYKLEEPLTEEECLRLLHKNAGYSSDCPEELKDISLEIVRKCRALPLAIAVAGGVLKEKDRSAHEWGLFSEELNRNPDLNITKIVGLSYDNLPIHLRLCLLYFGMYPKDYEIKSGRLVRQWVAEGFVTYEDRKTLEEVAHGYLLYLVERNLVQVTSYPRKEKVKKCRVSDSIHDMILTKVKDTCFGKYIGGGHDQSQSSELVRRLTIETNTDLNRRIKRSLIRSIIIITGKQEKAWSVDLESKILKDEMPLKVLDFEDCGLLCVPKKLGNLIYLRYLSFRGTQIKVLPKSIGKLVNLETLDIRQTQVCEVPKEIRKLRKLRHLLTPDSVSSSIQWKDIGGMTMLEKIPQVRMEDDGVAIREVGKLKQLRNLRVLCFDGEHITLLFYSINEMEHLQALRIEKSNDGIVVDLNTTSTISELRKLFLDLKLERLPNWIPQLHNLERLTLRHSDLTNDPLESLKDMPSLLVLSLSHAYEGQTLHFQSGGFKKLRKLNLEHLWNLNSILIDETALQCLEHLNLKGLDELRKVPDGIKHLKKLKFLLVPSMPTQFVQEIDRIWRINYGYMSFATKVAETSIPFARRYLPPKLFEALKMMRDLSKEVAEITDEHGSLLDFIDDADKLADAEEDVKRRDRMKERLMRLREATFRTEDVIDEYCIRVKEKQPQHGPRWAASLSKTVHSIKTFILRLQIACKIQDEKSVVRDEKVGFESQYFSEKILNSSRENKNVTFNQLRMDPLFMKEEEVVGLAGPTERLTDWLTNGREERTVISVVGIAGVGKTTLAKHVFDRVHRYFECHALITVSQSYTVEELLRNMVRKLCKERKEDPHCKISTMDRGSLIEEVRDRLHQKRYVVLFDDVWNEKFWDDIQSALIDDNNKSRIIITTRHEKVAVFCKKSSFVEVHKLEEPLKDESFRLFCRKAFKYGSAGGCPEELKDLSLEIVRKCKGLPLAIVAIGGVLSQKDENAKEWRLFSQNLSSELKRNPDLNIITKIIGLSYDNLPSHLRLCLLYFGMYPKDYEIESERLVRQWVAEGFVTHEEGKTLEEVAHEYLLGLVRRSLVQVSSFSMEGKVKKCRVHDLIHDMIRTKMKDKCFGEYVGGGHDQSETSELVRRLTIQANNDLNRRIKRSHIRSIIVIPGKKEELLSVHLVRKIPTDYMLLKVLDFEDCGLLCVPKKLGNLIYLRYLSFRGTQIKVLPKSIGKLVNLETLDIRQTQVCEVPKEIRKLRKLRHLLTPDSVSSSIQWKDIGGMTMLEKIPQVRMEDDGVAIREVGKLKQLRNLRVLCFDGEHITLLFYSINEMEHLQALRIEKSNDGIVVDLNTTSTISELRKLFLDLKLEKLPNWIPQLHNLERLTLRHSDLTNDPLESLKDMPSLLVLSLSHAYEGQSLHFQPGGFKKLRMLNLEHLWNLNSILIAETALQSLEHLKLKGLDELRTVPDGIQHLKKLKFLLVPSMPTQFVKEIDRIGKNQHWNINYGYM 1785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02434 1785 SUPERFAMILY L domain-like 550 870 - -
Vimu2g02434 1785 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 144 413 IPR027417 -
Vimu2g02434 1785 Gene3D - 1040 1210 IPR027417 -
Vimu2g02434 1785 SMART AAA_5 1073 1215 IPR003593 GO:0016887
Vimu2g02434 1785 SMART AAA_5 182 332 IPR003593 GO:0016887
Vimu2g02434 1785 FunFam Probable disease resistance protein At1g63360 1305 1394 - -
Vimu2g02434 1785 FunFam Probable disease resistance protein At1g63360 399 488 - -
Vimu2g02434 1785 PRINTS Disease resistance protein signature 1154 1168 - -
Vimu2g02434 1785 PRINTS Disease resistance protein signature 1508 1524 - -
Vimu2g02434 1785 PRINTS Disease resistance protein signature 1076 1091 - -
Vimu2g02434 1785 PRINTS Disease resistance protein signature 1253 1267 - -
Vimu2g02434 1785 Pfam Rx N-terminal domain 896 978 IPR041118 -
Vimu2g02434 1785 FunFam Probable disease resistance protein At1g61300 1037 1206 - -
Vimu2g02434 1785 Gene3D Ribonuclease Inhibitor 1455 1565 IPR032675 -
Vimu2g02434 1785 Pfam NB-ARC domain 1060 1307 IPR002182 GO:0043531
Vimu2g02434 1785 Pfam NB-ARC domain 171 407 IPR002182 GO:0043531
Vimu2g02434 1785 Gene3D - 890 1000 - -
Vimu2g02434 1785 Gene3D - 9 115 - -
Vimu2g02434 1785 FunFam Probable disease resistance protein At1g61300 147 307 - -
Vimu2g02434 1785 Gene3D - 142 307 IPR027417 -
Vimu2g02434 1785 Gene3D Ribonuclease Inhibitor 526 667 IPR032675 -
Vimu2g02434 1785 PANTHER DISEASE RESISTANCE PROTEIN RP 926 1726 IPR044974 GO:0006952
Vimu2g02434 1785 Coils Coil 31 51 - -
Vimu2g02434 1785 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1038 1319 IPR027417 -
Vimu2g02434 1785 SUPERFAMILY L domain-like 1383 1768 - -
Vimu2g02434 1785 Gene3D - 317 399 IPR042197 -
Vimu2g02434 1785 Gene3D - 1217 1304 IPR042197 -
Vimu2g02434 1785 Gene3D Ribonuclease Inhibitor 1574 1776 IPR032675 -
Vimu2g02434 1785 Gene3D Ribonuclease Inhibitor 669 869 IPR032675 -
Vimu2g02434 1785 Coils Coil 933 953 - -
Vimu2g02434 1785 Gene3D - 400 490 IPR036388 -
Vimu2g02434 1785 Gene3D - 1305 1396 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02434 Vimu-Chr2 20119786 20133542 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02434 186 402 WRKY Transcription Factor Family AT5G45050 25.455 3.17e-11 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02434 K13457 - gmx:121174068 1019.99