Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02427 ATGCCAAGTGTTAAGTCTGATGTATCTGAGAGAGACTCAGAGCCATTTGTTGAAATTGATCCAACAAGAAGATATGGCAGATACAATGAACTGCTGGGATGTGGTGCTGTGAAAAAGGTGTACAGGGCATTTGATCAGGAAGAGGGGATAGAGGTGGCATGGAACCAAGTGAAACTGAGGAACTTCAGTGATGATCCTGCAATGTTGGAAAGGCTTTACTCTGAGGTGAGATTGCTCAGAAGCTTGACCAACAAAAACATCATCTCCCTTTACAGCGTTTGGAGGGATGAGAAGCACAATACTTTGAACTTCATCACTGAGGTCTGCACCAGTGGGAATCTGAGGGAGTACAGAAAGAAACACAGGCATGTGTCTATGAGAGCTTTGAAAAAGTGGTCCAAGCAGATTTTGGAAGGCTTGAATTACTTGCATGTTCATGACCCTTGTATCATCCACAGAGACCTCAACTGCAGCAATGTCTTTGTCAATGGGAACACTGGCCAGGTTAAGATTGGTGACTTGGGTTTGGCAGCAATTGTGGGGAAGAGCCACTCTGCACATTCAGTTCTTGGGACACCAGAATTCATGGCACCTGAGTTGTATGATGAAGACTACACTGAAATGGTTGACATATACTCATTTGGAATGTGTGTGTTGGAGATGGTAACACTAGAGATTCCTTACAGTGAATGTGACAATGTTGCTAAGATATACAAGAAGGTGTCAACAGGTGTGAGACCTCAAGCCCTGAGCAAGATCCAAGATCCTGAAGTGAAGGCCTTCATTGAGAGGTGTATTGCTCAGCCAAGGGCTAGACCTTCAGCTGCAGAGTTGCTCAAGGACCCCTTCTTTGATTTGCTTGATTATGATGAAGATGATGACTCTAATACTTCATGA 897 0.4415 MPSVKSDVSERDSEPFVEIDPTRRYGRYNELLGCGAVKKVYRAFDQEEGIEVAWNQVKLRNFSDDPAMLERLYSEVRLLRSLTNKNIISLYSVWRDEKHNTLNFITEVCTSGNLREYRKKHRHVSMRALKKWSKQILEGLNYLHVHDPCIIHRDLNCSNVFVNGNTGQVKIGDLGLAAIVGKSHSAHSVLGTPEFMAPELYDEDYTEMVDIYSFGMCVLEMVTLEIPYSECDNVAKIYKKVSTGVRPQALSKIQDPEVKAFIERCIAQPRARPSAAELLKDPFFDLLDYDEDDDSNTS 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02427 298 Gene3D Phosphorylase Kinase; domain 1 9 107 - -
Vimu2g02427 298 SUPERFAMILY Protein kinase-like (PK-like) 19 285 IPR011009 -
Vimu2g02427 298 FunFam Probable serine/threonine-protein kinase WNK1 10 107 - -
Vimu2g02427 298 ProSiteProfiles Protein kinase domain profile. 26 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g02427 298 CDD STKc_WNK 24 284 - -
Vimu2g02427 298 FunFam probable serine/threonine-protein kinase WNK9 109 289 - -
Vimu2g02427 298 Gene3D Transferase(Phosphotransferase) domain 1 109 287 - -
Vimu2g02427 298 Pfam Protein kinase domain 29 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g02427 298 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 10 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02427 Vimu-Chr2 19958928 19960255 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02427 10 285 MAP Kinase Kinase Kinase AT5G55560 84.420 0.0 507
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vimu2g02427 Pkinase 2.3e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02427 K08867 - gmx:100782039 545.428
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02427 2 19958928 19960255 Vimu2g02427 2 19958928 19960255 ECH
Vimu2g02427 2 19958928 19960255 Vimu1g00348 1 2049478 2051073 PCT