Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02424 ATGGACACCGCCGAAGCCCCCTCCGACGATCCAAATCGACCTGGGTCGAGGCCCAATTCTGCCCCAGACGCTGCTCCGGCCGGCGGCGGCGCAAGGTACAAGCTCATGTCACCGGCGAAGCTCCCGATCTCACGCTCGCCGTGCGTCACGATTCCGCCGGGGCTCAGTCCGACTTCGTTTCTCGAGTCGCCGGTGCTGCTCTCCAACATGAAGGTGGAACCTTCACCGACTACAGGATCCCTTTTTATGCTTCACCAAACAGCTCATGCTTCTGTGACTTCTGCTGCATCTGCTTCATTTCCTGTAACCACTGCAAGCTTCAATACCAATACTATTGATGACCGAAAACCCAGCTTCTTTGAGTTTAAACCGCACAGTAGACCAAATATGGTTCCTGCAGACCCTAACAATCATGCAAGTGAAAAGTCTACTCAACTAGATGGTGAAGGAAAAACTCAACCTTTTGATTCATCACCATTAGTAAAAAGTGAGATAGCGGTCCCTTCAAATGAATTAAGTCTATCATCACCTGTTCAAATTGTTAGCTCGGGAGCAAATGCCCGTGTTGAAGGTGATTTGGATGAACTGAACCCTAGGAGCAACATAGCAAATGGGCTTCAAGCATCAAATATTGACAATAAAGGAAGTGGACTTTCCGTTGCAGCTGAGCGAGTATCTGATGATGGATACAACTGGAGAAAGTATGGGCAGAAACATGTTAAAGGAAGTGAGTTTCCACGCAGTTATTACAAATGTACACATCCTAACTGTGAAGTTAAGAAACTATTTGAACGCTCTCATGATGGGCAAATCACTGAGATAATTTATAAGGGAACACATGATCATCCGAAACCCCAGCCAAACCGGCGATACTCTAGTGGAACTATGATGACCATGCAAGAAGAGAGGTCTGATAAAGCTTCTTTCCGAGATGAGAAAGGATCCAATATATGTGGCCAGGTGTCTCACCCAGCTGAGACTGACAGTACTCCAGAGTTATCGCCTGCAGCAACAAATGATGGTGATCCAGAGGGTACAGGATTTTTTTCAAATCGGAGCAATGATGAGGTTGATGATGATGATCCCTTATCAAAGCGAAGAAAAATGGAGCTTGCAAATCCTGACATTACTCCTGTAGTTAAGCCTATTAGGGAGCCACGGGTCGTTGTACAAACTCTGAGTGAGGTTGATATATTGGATGATGGTTACCGCTGGCGCAAGTATGGGCAGAAGGTGGTGAGAGGCAATCCTAACCCTAGGAGTTATTACAAATGCACAAACACGGGGTGCCCCGTTAGGAAACATGTGGAGAGGGCTTCTCATGATCCAAAAGCTGTGATAACCACATATGAGGGGAAACACAATCATGATGTGCCAACTGCAAGGAATAATAGTTGCCATGAGATTGCAGGATCAGCAAGTGCTGCTAGTGGACAGACAAGAATTAGGCCAGAAGAAAGTGATACCATCAGCCTTGACCTTGGTATGGGAATTAGCCCTGCTTCGGAAAACACACCAAACAGTCAAGTGAGAATGATGCTTCCTGAATTTGGGGACAGCCAAGCTCATACCAGCAACTCCAATTTCAAGTTTGTTCATACTTCGGGGGCACCGGTGTACTTTGGTGTTCTAAATAACAACTCTAACCCATATGGCTCTAAAGAAAATCCAAGTGATAGTAGTACATCTTTAAACCATTCTGCGTATCCCTGCCCTCAGAACGTGGGAAGAATACTAATGGGTCCGTAA 1749 0.462 MDTAEAPSDDPNRPGSRPNSAPDAAPAGGGARYKLMSPAKLPISRSPCVTIPPGLSPTSFLESPVLLSNMKVEPSPTTGSLFMLHQTAHASVTSAASASFPVTTASFNTNTIDDRKPSFFEFKPHSRPNMVPADPNNHASEKSTQLDGEGKTQPFDSSPLVKSEIAVPSNELSLSSPVQIVSSGANARVEGDLDELNPRSNIANGLQASNIDNKGSGLSVAAERVSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQPNRRYSSGTMMTMQEERSDKASFRDEKGSNICGQVSHPAETDSTPELSPAATNDGDPEGTGFFSNRSNDEVDDDDPLSKRRKMELANPDITPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNTGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARNNSCHEIAGSASAASGQTRIRPEESDTISLDLGMGISPASENTPNSQVRMMLPEFGDSQAHTSNSNFKFVHTSGAPVYFGVLNNNSNPYGSKENPSDSSTSLNHSAYPCPQNVGRILMGP 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02424 582 MobiDBLite consensus disorder prediction 550 570 - -
Vimu2g02424 582 MobiDBLite consensus disorder prediction 550 575 - -
Vimu2g02424 582 FunFam WRKY transcription factor 33 386 452 - -
Vimu2g02424 582 MobiDBLite consensus disorder prediction 353 370 - -
Vimu2g02424 582 Pfam WRKY DNA -binding domain 400 456 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu2g02424 582 Pfam WRKY DNA -binding domain 227 283 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu2g02424 582 SUPERFAMILY WRKY DNA-binding domain 223 285 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu2g02424 582 ProSiteProfiles WRKY domain profile. 394 459 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu2g02424 582 MobiDBLite consensus disorder prediction 136 159 - -
Vimu2g02424 582 MobiDBLite consensus disorder prediction 320 336 - -
Vimu2g02424 582 Gene3D WRKY domain 384 460 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu2g02424 582 Gene3D WRKY domain 218 286 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu2g02424 582 MobiDBLite consensus disorder prediction 277 370 - -
Vimu2g02424 582 SUPERFAMILY WRKY DNA-binding domain 391 459 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu2g02424 582 SMART WRKY_cls 226 284 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu2g02424 582 SMART WRKY_cls 399 458 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu2g02424 582 FunFam WRKY transcription factor 216 286 - -
Vimu2g02424 582 MobiDBLite consensus disorder prediction 1 33 - -
Vimu2g02424 582 MobiDBLite consensus disorder prediction 118 160 - -
Vimu2g02424 582 ProSiteProfiles WRKY domain profile. 221 285 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu2g02424 582 MobiDBLite consensus disorder prediction 288 302 - -
Vimu2g02424 582 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 62 487 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02424 Vimu-Chr2 19910450 19915583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02424 36 582 WRKY Transcription Factor Family AT4G26640 55.993 0.0 535
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu2g02424 WRKY 1.7e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02424 - - gmx:100781491 975.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02424 2 19910450 19915583 Vimu2g02424 2 19910450 19915583 ECH
Vimu2g02424 2 19910450 19915583 Vimu1g00344 1 2024862 2028716 PCT