Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02423 ATGCAAACATCTCAGAATCATAAAATTTCTTATGGCTCTGGTGGGTTCTATGTTGAGCCTGTGCAAAATTTGGAGTCATATTGCTTACCATCAAGTGAGAACATAGACAATTACTCTTCCTCTGATAACAGCAGCCAAACAACCTACCCTTCTGTCCAAACCTTAGAGCAATATTGCACCCTTGAATCTGCTTCCACAAGCAACAGTTTCCCTTGCCAAAATTCTCCACCTGCTCTCAGTTTCTCATCAAACAATAGCCCATTGTCAAAGATAGAGTCAAATTCATATGTGCTAAGGCCACAACATTCTCTTGAAATAGCTAGTGGCCCACCTGAGAATGATCCTTACACGATTCTCGACCTTGATGACCTGTCGCATAAGATGAGAGAACTGGAAACTGCTATGCTGGGACCTAATGTGGATATGCTAGATATCTACGGCGCTCTAATGCCAGGAGAAGCTGATTCAATTTTGTTAGAGGCTGAGAAGTGGAAGAAAATGATGGAGATGGTATCTAGAGGGGATTTGAAAGAGATGCTTTATACTTGTGCAAAGGCAATGGCTGTGAATGATATGGAGACAACTGAATGGATGATGTCAGAGTCACGCAAGATGGTTTCCGTTTCTGGCAATCCGATTCAGCGGTTGGGAGCATACATTGTGGAGTCTCTTGTAGCAAGGATGGCTGATTCAGGAAGCACAATCTATAAATCTTTGAAATGTAGTGAGCCTACTGGTAATGAGCTACTTTCGTACATGCATGTACTCTATGAAGTTTGTCCATATTTCAAGTTTGGATACTTGTCAGCAAACGGAGCAATTGCTGAAGCTCTGAAGGAGGAAAGTGAAGTTCACATAATAGACTTTCAGATTTCCCAGGGAACTCAATGGGTGAGCCTGATTCATGCTCTTGCTCACCGTCCAGGAGGGCCACCAAAGATCAGAATATCAGGTGTTGATGACTCCTTTTCATCTTATGCCCGAGGAGGAGGACTTGATATTGTAGGGAAAAGGTTATCAGCACTTGCAGAGTCATGCAATGTACCCTTTGAGTTCAATGCTGTGAGAGTACCTGCTTCTCAAGTGCAACTTAAAGACCTTGAACTTCGCCCTTATGAAGCTGTGGCTGTGAACTTTGCCATTATGTTGCACCATGTGCCTGATGCAAGTGTGAATGGCCACAATCATCGCGATAGGTTGTTGAGATTAGCCAAGCACTTGTCTCCTAAGGTGGTGACTCTTGTGGAGCAAGAATTTAACACCAACAACGCCCCATTCTTGCAGCGATTCGTTGAGACAATGAACTACTACTTGGCTGTTTTTGATTCAATTGATGCTGCTCGTCCAAGGGAGGACAAAGAGAGGATTAATGTGGAGCAGCACTGTTTGGCTCGTGAAGTTGTCAACTTAATAGCATGTGAAGGAGAAGAAAGAGTTGAACGTCATGAGCTTCTGAATAAGTGGAGAATGCGTTTCACAGATGCTGGATTTTCACCTTATCCTTTGAACTCCTTTATTAATTCTTCAATCAAAGATCTTCTCCAGAGCTACCATGGTCACTACACTCTAGAAGAGAAAGATGGTGCACTTTTTCTTGGTTGGAAGAATCAAGTTCTTATTGCCTCTTGTGCTTGGAGATGA 1641 0.4296 MQTSQNHKISYGSGGFYVEPVQNLESYCLPSSENIDNYSSSDNSSQTTYPSVQTLEQYCTLESASTSNSFPCQNSPPALSFSSNNSPLSKIESNSYVLRPQHSLEIASGPPENDPYTILDLDDLSHKMRELETAMLGPNVDMLDIYGALMPGEADSILLEAEKWKKMMEMVSRGDLKEMLYTCAKAMAVNDMETTEWMMSESRKMVSVSGNPIQRLGAYIVESLVARMADSGSTIYKSLKCSEPTGNELLSYMHVLYEVCPYFKFGYLSANGAIAEALKEESEVHIIDFQISQGTQWVSLIHALAHRPGGPPKIRISGVDDSFSSYARGGGLDIVGKRLSALAESCNVPFEFNAVRVPASQVQLKDLELRPYEAVAVNFAIMLHHVPDASVNGHNHRDRLLRLAKHLSPKVVTLVEQEFNTNNAPFLQRFVETMNYYLAVFDSIDAARPREDKERINVEQHCLAREVVNLIACEGEERVERHELLNKWRMRFTDAGFSPYPLNSFINSSIKDLLQSYHGHYTLEEKDGALFLGWKNQVLIASCAWR 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02423 546 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 129 541 IPR005202 -
Vimu2g02423 546 ProSiteProfiles GRAS family profile. 167 546 IPR005202 -
Vimu2g02423 546 Pfam GRAS domain family 176 546 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02423 Vimu-Chr2 19904737 19908856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02423 1 546 GRAS Transcription Factor Family AT1G50600 56.159 0.0 597
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vimu2g02423 GRAS 3.5e-129 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02423 - - gmx:100785400 959.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02423 2 19904737 19908856 Vimu1g00342 1 2019001 2020617 PCT