Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02422 ATGGATATTTCAGAGTACACAGGTATAGTTTTAGGTAAACTTCAGAAATTTGAGCCTGAGAACGCCTCAAAGATCTTAGGGTATCTCCTTGTCCAAGAACATGGGGAAGAAGAAATGGCGAAATTGGCTTCACTTCCTGATCATTTAATCCGTGAAGTGGCGTTCCAGACTAGAACCAAGCTTCCAAGGTCAGCTCCTAGATCAATCATTCCTCCAATTTCACCTCCCATGAACTGTCAACCAGGTTTTTCCCAGTTATCAGTAATCTCCCCTACTTCAGTAATCACACCTGACACCCCTACCACAGCGGCAAGCTTCCAGGTTCAATCTCCCTTCTGGGATCCTCAGTCTGTTAACAATGCCAATGCAGAATATATGGCACAGGGTTATTTGGGTTCCATCTCAGAATTTCAAAAGCAAAATCCGTACTTCACTCTGGAGAATCATATGGATGCTGTAAATTCTCGTGCTGTTGGGACTTCAGGCACTCCAAGTATTGCTAATGATTACTATGGCTTAGATGCTTTATCAGCTGGTAATTTGGGTGGAAAAGCTGGTAGAAGGTTTGACCATCCAGTCAAGACCTGTCACTACTTTAACAAAGGATTTTGTAAGCATGGAAATAGCTGTAGATACTATCATGGACTGGGGCCCCCTGATGCATTCCCTCACATGTATGGAAATGATAGTTTTAATGATGATCAGATGATTTCACCTGGGTCACTGGCACAACTAGAGTCTGAAATTGTGGAACTCCTGAAACTGAAAAAGGGTGGTTCTATATCAATTGCTTCCCTTCCAATGGCATACTTTGAGAAGTATAAGAAGGTGCTGCAGGCTGATGGCTACCTCACTGAGAGCCAGAGACATGGAAAATCTGGCTACAGTTTGACTAAGCTTCTTGCACGGTTGAAAAATAGCATTAGGCTAATTGACAGGCCTCATGGGCAGCATTCGGTTGTTCTGGCTGAAGATGCTCCGAAGTTCAATGGAAAGGGAGATTATGGTAGATACATCAGTGCATCACGACAGATATACCTGACATTTCCAGCTGACAGCACTTTTAGCGAGGCTGATGTTTCAAACTACTTTAGCACTTTTGGGAAAGTTGAAGATGTAAGGATTCCAAGCCAAGAAAGAAGGATGTTTGGATTTGTGACATTTGATGATCCTGAAACTGTTAAAGCAATTTTGGATAAGGGAAATCCCCATTATGTCTGCGAATCACGGGTTCTTGTGAAACCTTACAAAGAGAAGCCAAAACTTATGCTGAGAAAGCACTCAGATAGAATTGAGCACCAGCACCCTGCTTATTACTCAGCACACTACGTAGATGTTGACACTGAACCTACGCCAATTCCAAGAGGTTGCAGTAACCCTCGATTACTCAGGAGCCTGATCATTGAACAGCAAGAGGAGGCTGCCTTTGAATTTCATAGAAGACGTTTTGCAGAGCTGCAGTTGGCCCAAAAATCTTTTACCACTTCACCCCATTTAGGCTTTAACACTGGCGGAGCAAAAGCTTCAAATGATCCTTTCAATGTCCATTCTGCAGAATCTCAGAATCATGTTGTGAATGACAAATCCGGATATATGGATAACAATTACACTGCTGAGGACAGCAATCAAGGACTGAATCTCCCAGATAGCCCATTTTCATTTCCAGTAGATAGTGGAATTTCAGCAGTAATTTAG 1695 0.4271 MDISEYTGIVLGKLQKFEPENASKILGYLLVQEHGEEEMAKLASLPDHLIREVAFQTRTKLPRSAPRSIIPPISPPMNCQPGFSQLSVISPTSVITPDTPTTAASFQVQSPFWDPQSVNNANAEYMAQGYLGSISEFQKQNPYFTLENHMDAVNSRAVGTSGTPSIANDYYGLDALSAGNLGGKAGRRFDHPVKTCHYFNKGFCKHGNSCRYYHGLGPPDAFPHMYGNDSFNDDQMISPGSLAQLESEIVELLKLKKGGSISIASLPMAYFEKYKKVLQADGYLTESQRHGKSGYSLTKLLARLKNSIRLIDRPHGQHSVVLAEDAPKFNGKGDYGRYISASRQIYLTFPADSTFSEADVSNYFSTFGKVEDVRIPSQERRMFGFVTFDDPETVKAILDKGNPHYVCESRVLVKPYKEKPKLMLRKHSDRIEHQHPAYYSAHYVDVDTEPTPIPRGCSNPRLLRSLIIEQQEEAAFEFHRRRFAELQLAQKSFTTSPHLGFNTGGAKASNDPFNVHSAESQNHVVNDKSGYMDNNYTAEDSNQGLNLPDSPFSFPVDSGISAVI 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02422 564 ProSiteProfiles Zinc finger C3H1-type profile. 190 217 IPR000571 GO:0046872
Vimu2g02422 564 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 556 - -
Vimu2g02422 564 Pfam OST-HTH/LOTUS domain 241 320 IPR025605 -
Vimu2g02422 564 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 343 419 IPR000504 GO:0003723
Vimu2g02422 564 SUPERFAMILY CCCH zinc finger 190 215 IPR036855 GO:0046872
Vimu2g02422 564 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 195 215 IPR000571 GO:0046872
Vimu2g02422 564 Gene3D - 347 421 IPR012677 -
Vimu2g02422 564 CDD RRM_AtC3H46_like 345 414 IPR034365 -
Vimu2g02422 564 Gene3D - 188 252 - -
Vimu2g02422 564 FunFam zinc finger CCCH domain-containing protein 53-like isoform X2 350 421 - -
Vimu2g02422 564 SUPERFAMILY RNA-binding domain, RBD 354 438 IPR035979 GO:0003676
Vimu2g02422 564 SMART rrm1_1 344 414 IPR000504 GO:0003723
Vimu2g02422 564 ProSiteProfiles OST-type HTH domain profile. 241 324 IPR025605 -
Vimu2g02422 564 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 355 402 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02422 Vimu-Chr2 19856535 19858991 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02422 - - var:108341215 1085.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02422 2 19856535 19858991 Vimu2g02422 2 19856535 19858991 ECH
Vimu2g02422 2 19856535 19858991 Vimu1g00339 1 2004858 2008346 PCT