Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02419 ATGAACACTGCTGATTGGGATCAAGAACTGAGAAAGTATCAGGATGTAATAGCTTCAGGTACCAAGAGTATGAAAATAAAGGCCATGATGATGCTGGCACGTTTTTCTAAGCATGCCCCTGAGTATGTTTTAGCTAGCACCATACCCATTCTCACTGAGATTCTTGGTCACAATGTTTCAAATGACTCTGGTCCTACACTTCAAGAGGCTGCTGCTTATTGCTTGAAGTGCATTGCTTGCAGGGGTGAGGGTGCGTTGGCCATTGAAATTGGTGGACACGGTGCCCCTCATTCTTTGATGAGGTTGTTGCCTCACTCTGATGGAAGGATGCAGAAGGTCCTGATAAAGTGTTTGCTCGTTATTGTTAGTTTTTGTAATGCAAGTAGGACAGTTGTTGCCACCAATGGTGGGGTGGAAATGATCATTGGTTTGTTGAGTTCTTGCACCAATGATACTAAGAGGTATTTGTTGGAAATTTTGAGTGTGTTAGCATTGAGGAGGGATGTTAGGAAGGCTCTCACTAGACTGAGAGCTCTACATTATGTTGTGGAGGCTGCTAGTTTTGGGAGCATGGTGTCTAGGGAAAGGGCTTGTCAAGCAATTGGGTTGCTTGGAGTCACCAGACAGACTCGGCGTATGCTTGTTGAATTGGGAGCAATTCCAGTGCTAGTGTCCTTGTTTCGTGAAGGAGAACACTCCACAAAGCTTGTTGCTGGTAATTCTCTTGGTGTGATATCTGCTCATGTTGATTACATTAGGCCGGTTGCTCAAGCTGGGGCTATTCCCCTTTATGCTGAGCTTCTTGAAGGACCTGATCCCTCTGGGAAAGAGATAGCTGAGGATGTTTTTTGTATATTGGCTGTTGCTGAGGCTAATGCTGTTGAAATTGCTGGTCACTTGGTGAGGATTCTGAGAGAAGGTAATGATGAGGCAAAGGCTTCTGCGGCGGATGTGATGTGGGATCTGTCGGGTTACAAGCATTCAATGTCTGTAGTACGGGATTCAGGTGCGATTCCTATTCTTGTTGAGCTTTTGGAGACTGGGAGTGAAGATGTGAAGGTGAATGTTTCTGGGGCATTTGCTCAACTGAGCTATGATGGAACTGATAGAATGTCACTTGCTGAGGCAGGGGCGATTCCAATTCTCATAGACTTGATGAATGATGTTGATGAGGTTGAGGAACTAAGGGATAATGCTACGGAGGCTCTTGTAAATTTTTATGAAGATCCATTGTATCATGATAGAGTGTCGGATGCAATTAATGTTTCTTCCTTCAGAAATATGCAGAATAGGTTAATTCATATTCGGGCATCGAATGAGCACATGGCTAGATCCTTGAGAAGAATGAGTGTTGAGCAGCTCACATGGAACCCAGATCTTGTATAA 1386 0.443 MNTADWDQELRKYQDVIASGTKSMKIKAMMMLARFSKHAPEYVLASTIPILTEILGHNVSNDSGPTLQEAAAYCLKCIACRGEGALAIEIGGHGAPHSLMRLLPHSDGRMQKVLIKCLLVIVSFCNASRTVVATNGGVEMIIGLLSSCTNDTKRYLLEILSVLALRRDVRKALTRLRALHYVVEAASFGSMVSRERACQAIGLLGVTRQTRRMLVELGAIPVLVSLFREGEHSTKLVAGNSLGVISAHVDYIRPVAQAGAIPLYAELLEGPDPSGKEIAEDVFCILAVAEANAVEIAGHLVRILREGNDEAKASAADVMWDLSGYKHSMSVVRDSGAIPILVELLETGSEDVKVNVSGAFAQLSYDGTDRMSLAEAGAIPILIDLMNDVDEVEELRDNATEALVNFYEDPLYHDRVSDAINVSSFRNMQNRLIHIRASNEHMARSLRRMSVEQLTWNPDLV 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02419 461 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 336 378 IPR000225 GO:0005515
Vimu2g02419 461 SMART arm_5 35 80 IPR000225 GO:0005515
Vimu2g02419 461 SMART arm_5 207 247 IPR000225 GO:0005515
Vimu2g02419 461 SMART arm_5 366 408 IPR000225 GO:0005515
Vimu2g02419 461 SMART arm_5 248 288 IPR000225 GO:0005515
Vimu2g02419 461 SMART arm_5 125 165 IPR000225 GO:0005515
Vimu2g02419 461 SMART arm_5 325 365 IPR000225 GO:0005515
Vimu2g02419 461 Gene3D - 249 424 IPR011989 -
Vimu2g02419 461 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 377 406 IPR000225 GO:0005515
Vimu2g02419 461 SUPERFAMILY ARM repeat 288 410 IPR016024 -
Vimu2g02419 461 SUPERFAMILY ARM repeat 12 322 IPR016024 -
Vimu2g02419 461 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN 4 ARMC4 300 418 - -
Vimu2g02419 461 Pfam Armadillo/beta-catenin-like repeat 331 364 IPR000225 GO:0005515
Vimu2g02419 461 Coils Coil 382 402 - -
Vimu2g02419 461 Gene3D - 5 248 IPR011989 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02419 187 412 U-box Gene Family AT3G46510 26.496 3.93e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02419 - - gmx:100819735 819.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02419 2 19829718 19832386 Vimu2g02419 2 19829718 19832386 ECH