Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02414 ATGGCAAAGGAGCTTGCCATACTTTCTGATTTGGCCTTGAAAATACATCAGAACGCCCATGTTTGTTCAGAATTTTGTGCTGCTTGTGTTTACTTCTTCTTGTCTTGTTATTGCCTTGTTTCTGACGTAGGTCCCACTATTACGTGTTTATTTCTATGTTATATTGGATGTTCTGTTAGCAATATGGCCAAGCTTGCCCCTCTTGAAGACCCTCTTTTGGATGGTGACTCTACTTCAATCAACAATTCTGATCCTATTAAGACCAGAGGAAATGAAAATTTGACCCGATATTCAAATGCTGGATTTTTCAGTATTCTTTCTTTCTCATGGATCACTCCATTAATAACACTGGGAAATCACAAGACTTTAAACCATGAAGACCTCCCACTTCTTGCTACTGCTGACAGTGCCTATGGGGTTTATCCAACTTTTAGAAGAAAACTCGAGTCAGAGTGTGGTAGTGTTAAAAATGTGACCACACTTAAGCTGGTGAAGGTATTATTCTTGTCGACATGGCAAGGGATCTTTTTATCAGGTTTATTTGCATTCCTCTATGCCTGTGCTTCTTATGTTGGACCCTTTCTTATTGACATCCTTGTTCGATACCTCAATGGAGAATACATGTTTAAAAATGAAGGCTATGTTTTGGCTGCGACTTTTGTTGCTGCAAAGCTTGTGGAGTGTCTTTCACAGAGGCACTGGATGTTTAGGTTTCAACAGGTTGGGGTTAGAATGCAATCCATGTTGGTGGAAATGATCTATGCTAAAGGTTTGACTCTTTCGTGTCAATCAAAGGAGGTTCGTAGTACTGGGGAAATCATCAACTTAATGACTGTCGATGCTGAAAGAATTGGCGAATTCTGTTGGTACATGCATGATCCATGGATGTGTGTTTTGCAGCTTGCTTTGGCCCTGTTAATTCTCTATAGAAGTGTGGGTGTTGCTTCGTTAGCTGCTCTTGCTGCCACTGTAATTGTGATGTTGCTAAACCATCCTGTGGCATCATTGCAAGAAAAGTTCCAAGGCAAGATAATGGAATTCAAAGATAAAAGAATGAAGGCTACGTCTGAGATACTTAAGAATATGAGGATTCTAAAACTGCAAGCATGGGAGATGAAGTTCTTATCAAAGATTATTCAGATTAGAAAGAGTGAAGAGACATGGCTAAGGAAATTTCTTGCTGGCACAGCAACTATTCGATTCTTCTTCCACAACGCCCCAACTTTTATTGCAGTTGTTACGTTTGGTGCTTGTGCTCTTGTGGGGATACCACTTGAATCAGGGAAGGTGTTGTCTGCACTTGCAATATTCAGAATTCTTCAAATGCCCATCTACAGTCTTCCGGACACAATTTCTATGATTGCACAAACTAAAGTTTCTCTGGATAGAATTGCATCATTTCTTAGACTAGACGAGTTGCGGACTGATATAGTACAGAAGCTTCCATGGGGTAGTTCTGACAAGGCAATTGAATTAGTGGATGGAAACTTCTCATGGGATTTATGTTCTCCTAATCCAACATTGAAAAACATAAATCTCAATGTTTATCATGGTATGAGAGTAGCTGTATGTGGTACTGTTGGATCAGGCAAGTCTAGTTTACTTTCTTGTATTATAGGGGAAGTACCAAAGATATCTGGGACATTGAAAATATGTGGAACAAAGGCTTATGTTTCTCAATCGCCATGGATACAGAGTGGAAAGATAGAAGACAACATATTATTTGGTAAAGAGATGGACAATGAAAAGTATGAGAAAGTGCTAGAAGCATGTTCCTTGACAAAAGACCTTGAGGTTCTTCCATTCGGTGATCACACCATTATTGGGGAGAAAGGAATCAATTTGAGTGGTGGTCAGAAGCAAAGAGTGCAAATAGCTCGTGCTCTATATCAAGATGCTGATATATATCTTTTTGATGATCCCTTCAGTGCCGTTGATGCTCATACAGGATCCCATCTCTTTAAGGAGTGCTTGCTTGGCCTTTTAAAATCAAAAACTGTGATATACGTAACACATCAAGTAGAGTTCTTACCTGATGCTGATCTAATATTGGTCATGAGAGAAGGAAGGATAACTCAATCAGGAAAATACAACGACATTCTCCAGACAGGCACAGATTTTATGGAACTTGTAGGTGCACACAGAGCAGCTTTGTCTTCAATTAAGTCTTTAGAGAGAAGATCAACATTTAAAACATCAAGTATCACCGATGAGAAAACAAATTCGTTAAATGATTTTGAAGTTGAGCAAAATGTGGAAGACATACATGTTGAAAATGATAAGCCAAACGACACAGTTGAGCCCAAAGGACAACTTGTTCAAGAAGAAGAACGAGAAAAGGGCAGTGTTGGGTTTAAAGTGTACTGGAAATACATCACAACAGCTTATGGAGGAGCTCTTGTGCCCTTCATATTACTTTCGCAGATACTCACTGTGGGTTTTCAGATTGCAAGCAATTATTGGATGACTGTAGCAACTCCTGTTTCGGCAACAGCAGAAACTAATATTGGAAGCTTTACACTCATGGTTGTCTATGTCGCTTTGGCAATTGGAAGTTCCATTTTCACCTTTGCCACATCATTTCTTGCTGTGATAGCTGGATACAAGACAGCCACTGTACTCTTCGATAAAATGCATTCGTGTATTTTTCGAGCACCAATATCATTTTTTGATTCCACCCCAAGTGGTCGAATCCTCAACAGAGCTTCAACAGACCAAAGCTCACTAGATATGTACATTGCAAACATATTATGGGCAATTACCCTCAATCTGGTACAACTATTGGGAAATGTTATTGTTATGTCTCAGGCTGCATGGCAGGTGTTCATAGTATTGATTCCTGTCATGGCAGCTAGCATATGGTACCAGCGGTACTATTCTGCATCTGCAAGAGAATTGGCACGATTGGTTGGTACATGCCAAGCTCCGGTTATACAACATTTTTCTGAAACAATTTCTGGATCAACAACCATAAGAAGTTTTGAACAAGAATCAAGATTTAATGACATAAACATGAAGTTGATAGACAGATATTCCCAACCCAAACTATACAGTGCTACTGCAATTGAATGGCTGAATTTCCGATTGGATATTTTATCCACTGTCATATTTGCCTTCTGTTTGGCATTCTTGGTATCTATCCCAAATTCAATGACTGCTCCTGGCATTGCGGGATTGGCTGTGACATATGGACTTAATCTAAATACTCTGCAAACTAAAGTAATCTGGTTTCTTTGTGACTTGGAGAAAAAGATTATATCTGTCGAGAGAATACTCCAGTACACATCCCTCCCAAGTGAAGCTCCTCTTGTGATTAAAGACAACCAACCGGATTGTTCTTGGCCATCATTTGGAGAGGTTCATATCTGGAATTTGCAGGTTCGATATGCTCCTCACTTACCTATTGTTTTACGAGGTCTTACTTGCACTTTTACTGCTGGATCAAAAACTGGTATTGTGGGAAGAACAGGAAGTGGAAAATCAACTCTTGTGCAAACACTTCTCCGCCTTATTGAACCTATGGATGGAAAAATATTAATAGATAACATTAACATATCTTTGATTGGAATTCATGATTTGCGGTCTAGACTCAGCATTATTCCTCAAGATCCAACCATGTTTGAAGGGACTATAAGAACCAACCTGGATCCACTGGAAGAGTACACGGATGAACAGATTTGGGAGGCTCTAGATATGTGCCAACTTGGAGATGATGTAAGGAGAAAAGAAGGGAAGCTGGACTCCATAGTGACTGAGAATGGAGAAAATTGGAGTATGGGTCAAAGGCAGTTGGTCTGCCTAGGCCGTGTTCTACTGAAGAAAAGCAAGATCTTGGTGCTTGATGAAGCTACTGCATCTGTTGACACAGCCACAGATAATATTATTCAGCAAACAGTTCAGCAACATTTTTCAGAAAGCACAGTCGTTACCATTGCTCATAGGATAACTTCTATCATCGACAGTGACATGGTTCTATTTTTAAATCAAGGGTTGATAGAAGAATATGATTCACCTAAGAAACTTCTTAAGAACAAATCTTCATCTCTAGCTCAACTAGTTAAAGAGTACACAAAGAGGTCAAACTCTGGTTTTGGAAATTAA 4101 0.3945 MAKELAILSDLALKIHQNAHVCSEFCAACVYFFLSCYCLVSDVGPTITCLFLCYIGCSVSNMAKLAPLEDPLLDGDSTSINNSDPIKTRGNENLTRYSNAGFFSILSFSWITPLITLGNHKTLNHEDLPLLATADSAYGVYPTFRRKLESECGSVKNVTTLKLVKVLFLSTWQGIFLSGLFAFLYACASYVGPFLIDILVRYLNGEYMFKNEGYVLAATFVAAKLVECLSQRHWMFRFQQVGVRMQSMLVEMIYAKGLTLSCQSKEVRSTGEIINLMTVDAERIGEFCWYMHDPWMCVLQLALALLILYRSVGVASLAALAATVIVMLLNHPVASLQEKFQGKIMEFKDKRMKATSEILKNMRILKLQAWEMKFLSKIIQIRKSEETWLRKFLAGTATIRFFFHNAPTFIAVVTFGACALVGIPLESGKVLSALAIFRILQMPIYSLPDTISMIAQTKVSLDRIASFLRLDELRTDIVQKLPWGSSDKAIELVDGNFSWDLCSPNPTLKNINLNVYHGMRVAVCGTVGSGKSSLLSCIIGEVPKISGTLKICGTKAYVSQSPWIQSGKIEDNILFGKEMDNEKYEKVLEACSLTKDLEVLPFGDHTIIGEKGINLSGGQKQRVQIARALYQDADIYLFDDPFSAVDAHTGSHLFKECLLGLLKSKTVIYVTHQVEFLPDADLILVMREGRITQSGKYNDILQTGTDFMELVGAHRAALSSIKSLERRSTFKTSSITDEKTNSLNDFEVEQNVEDIHVENDKPNDTVEPKGQLVQEEEREKGSVGFKVYWKYITTAYGGALVPFILLSQILTVGFQIASNYWMTVATPVSATAETNIGSFTLMVVYVALAIGSSIFTFATSFLAVIAGYKTATVLFDKMHSCIFRAPISFFDSTPSGRILNRASTDQSSLDMYIANILWAITLNLVQLLGNVIVMSQAAWQVFIVLIPVMAASIWYQRYYSASARELARLVGTCQAPVIQHFSETISGSTTIRSFEQESRFNDINMKLIDRYSQPKLYSATAIEWLNFRLDILSTVIFAFCLAFLVSIPNSMTAPGIAGLAVTYGLNLNTLQTKVIWFLCDLEKKIISVERILQYTSLPSEAPLVIKDNQPDCSWPSFGEVHIWNLQVRYAPHLPIVLRGLTCTFTAGSKTGIVGRTGSGKSTLVQTLLRLIEPMDGKILIDNINISLIGIHDLRSRLSIIPQDPTMFEGTIRTNLDPLEEYTDEQIWEALDMCQLGDDVRRKEGKLDSIVTENGENWSMGQRQLVCLGRVLLKKSKILVLDEATASVDTATDNIIQQTVQQHFSESTVVTIAHRITSIIDSDMVLFLNQGLIEEYDSPKKLLKNKSSSLAQLVKEYTKRSNSGFGN 1366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02414 1366 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1120 1354 IPR003439 GO:0005524
Vimu2g02414 1366 ProSitePatterns ABC transporters family signature. 615 629 IPR017871 GO:0005524|GO:0016887
Vimu2g02414 1366 CDD ABCC_MRP_domain1 490 690 - -
Vimu2g02414 1366 Pfam ABC transporter 508 642 IPR003439 GO:0005524
Vimu2g02414 1366 FunFam ABC transporter C family member 5 764 1101 - -
Vimu2g02414 1366 CDD ABCC_MRP_domain2 1118 1338 - -
Vimu2g02414 1366 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 487 712 IPR027417 -
Vimu2g02414 1366 CDD ABC_6TM_ABCC_D1 177 464 IPR044746 GO:0140359
Vimu2g02414 1366 Gene3D - 1103 1356 IPR027417 -
Vimu2g02414 1366 SUPERFAMILY ABC transporter transmembrane region 801 1102 IPR036640 GO:0005524|GO:0016020
Vimu2g02414 1366 Gene3D ABC transporter type 1, transmembrane domain 764 1101 IPR036640 GO:0005524|GO:0016020
Vimu2g02414 1366 Gene3D ABC transporter type 1, transmembrane domain 147 472 IPR036640 GO:0005524|GO:0016020
Vimu2g02414 1366 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 803 1083 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu2g02414 1366 Pfam ABC transporter transmembrane region 175 443 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu2g02414 1366 Pfam ABC transporter transmembrane region 803 1045 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu2g02414 1366 Gene3D - 474 735 IPR027417 -
Vimu2g02414 1366 FunFam ABC transporter C family member 5 475 722 - -
Vimu2g02414 1366 FunFam ABC transporter C family member 3 1103 1355 - -
Vimu2g02414 1366 CDD ABC_6TM_ABCC_D2 801 1095 IPR044726 GO:0140359
Vimu2g02414 1366 SMART AAA_5 1146 1331 IPR003593 GO:0016887
Vimu2g02414 1366 SMART AAA_5 517 690 IPR003593 GO:0016887
Vimu2g02414 1366 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 98 1358 - -
Vimu2g02414 1366 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1112 1346 IPR027417 -
Vimu2g02414 1366 Pfam ABC transporter 1138 1285 IPR003439 GO:0005524
Vimu2g02414 1366 FunFam ABC transporter C family member 10 159 472 - -
Vimu2g02414 1366 SUPERFAMILY ABC transporter transmembrane region 172 469 IPR036640 GO:0005524|GO:0016020
Vimu2g02414 1366 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 176 456 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu2g02414 1366 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 490 713 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02414 Vimu-Chr2 19761381 19767590 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02414 490 734 Calmodulin-binding Proteins AT2G36910 29.502 8.93e-26 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02414 - K05666 gmx:106794105 2263.03