Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02406 ATGGCGGTTTCTTCTCTCTCTGTTACTCCTCTTTCTCTCTCCAATTCTTCTCCCTCTCTATCTTCCAAGCTAAAGTCGCCATCTTTGTGCCTTTTCACGGGTAACTCCTTGAGGGTCACATGCCCCAAGCCTCTGCAGTCATCAACTGTGGTTCATGTTGCTCCGGAAGTGTTGGATTCCTCCCCTGATCCCTTGGACCCACCTCCAGAAACCCTTGATGATGACACTGAACCCACCACCTATCAGGTTGGTGACTTGGGGACTCCGAGCACTTCGGCAATTAGCATTGGCGCTGATGCAGATGCAATGGCACCAAAGCAGAAGATTAGAATCAAGCTTAGATCTTACTGGGTGCCCTTGATAGAGGATTCCTGCAAGCAGATATTAGATGCAGCAAGGACTACCAATGCAAAAACGATGGGACCTGTGCCATTGCCAACCAAGAGGCGAGTCTACTGTGTTCTTAAATCCCCTCACGTACACAAGGATGCTCGGTTTCATTTCGAGATCAGAACTCACCAGCGTCTCATTGATATTCTGTATCCTACTGCTCAAACAATAGATTCACTTATGCAACTAGATCTTCCTGCTGGTGTTGATGTTGAGGTCAAGCTCTAG 618 0.479 MAVSSLSVTPLSLSNSSPSLSSKLKSPSLCLFTGNSLRVTCPKPLQSSTVVHVAPEVLDSSPDPLDPPPETLDDDTEPTTYQVGDLGTPSTSAISIGADADAMAPKQKIRIKLRSYWVPLIEDSCKQILDAARTTNAKTMGPVPLPTKRRVYCVLKSPHVHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02406 205 ProSitePatterns Ribosomal protein S10 signature. 132 147 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vimu2g02406 205 Hamap 30S ribosomal protein S10 [rpsJ]. 106 205 IPR001848 GO:0003735|GO:0005840|GO:0006412
Vimu2g02406 205 Gene3D Ribosomal protein S10 domain 97 205 IPR036838 -
Vimu2g02406 205 SMART Ribosomal_S10_2 110 204 IPR027486 -
Vimu2g02406 205 NCBIfam 30S ribosomal protein S10 107 204 IPR001848 GO:0003735|GO:0005840|GO:0006412
Vimu2g02406 205 FunFam 30S ribosomal protein S10 103 205 - -
Vimu2g02406 205 MobiDBLite consensus disorder prediction 57 86 - -
Vimu2g02406 205 Pfam Ribosomal protein S10p/S20e 110 204 IPR027486 -
Vimu2g02406 205 PRINTS Ribosomal protein S10 family signature 164 178 IPR001848 GO:0003735|GO:0005840|GO:0006412
Vimu2g02406 205 PRINTS Ribosomal protein S10 family signature 108 121 IPR001848 GO:0003735|GO:0005840|GO:0006412
Vimu2g02406 205 PRINTS Ribosomal protein S10 family signature 143 158 IPR001848 GO:0003735|GO:0005840|GO:0006412
Vimu2g02406 205 MobiDBLite consensus disorder prediction 1 25 - -
Vimu2g02406 205 SUPERFAMILY Ribosomal protein S10 108 205 IPR036838 -
Vimu2g02406 205 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 43 205 IPR001848 GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02406 107 205 Cytoplasmic Ribosomal Protein Gene Family AT5G62300 31.000 2.25e-08 49.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02406 2 19653982 19658979 Vimu2g02406 2 19653982 19658979 ECH