Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02383 ATGGCTGAAAGTGCAGTGACCATTCTGGCCCTTCTAGCTGAAAATTTGTTGAAGTTACTGAAGGATGAAGGAAGAATTTTAAGAGGGGTTCACAAAGATGTTGAACAGATCGAGAATCTGGTAAACAAAATCATACCTTTCATGAAGAATGCAGAGGAGAAGGTACTGATTGAAGAGAGTGTGAAAATTTGGATGAATGGGTTGAGGAAAGTGGTGTTTCGCATGGAGGATGTGGTTCATCTCTATTTGTTCAAAGTGGCAAAACGTGATGGAATGATGAAGAAGATCATAACTGTAAAACATCGTCATCGTATATCATCTGAGATTAAAGATATCAGAAAAACCCTAGATGATCTCTTCAGTATCAGCAAAGGACTACAACTCCAACCATTTCATGGAGACACTCTTCCCAATATAATTCCAAGGCCTCATTTTGTGGAGGAATCTCAACTTGTTGGTATTGAACATAACATGCAAAAGTTCAGAGATTGGCTGGCAAAAGCTAAAAGTCCACTGTTGGTGGTGGTAGGCCCACCGGGGATAGGTAAAACTTCAATAGTAAAGAATGTGTATAACAAGCAAACGAAATTGAACCAGCAGAAGAAAAAGAAGGATTTCCACTTTTGTGTATGGATAACCATGACTCAAGCTGATTCTTGGTATCCAATAATGGAAATTAAAGAAGAAATACTTAAGGCAGATCCTCGTGGATCAACTTCATTGAGGAGTGCAACAAGGGAGAATCTTATAGAAAAATTGAGAGAATACTTCACAGATAAGAGATGCCTCATCGTGTTAGATGATGTGAAGGAACTAAAAATTTGGAACGTTATCCAATTTGCCATACCTCAACATCGGGTTATTATCACTACACAACGTGATGATTTTCCAAATAATATTGGAAGTGATACAACTGTTGAAAAAATCATGTTAGAACCTTTGTCTTTAGAAAATGCTCTGAAGCTCTTTCACCAGAAGGTTAAGCATGTGCAATTCCCTGAGTTAAGTCAATTTTCCAAAGAATTCATGGAAAAATGCAATGGGGTGCCACTGGCCATTGTGGCCATTTCTAGTCTCCTTTCCACTATGAAATCTGCCAATGAATGGCAAAGGGTACGTGACGATCTTGGTTCATTATTGCAAAGTCACCATCATCTTAAAACGTTCCAACTTGTATTGTTGCAAAGTTACCAAGAACTTCCTTATCGCCTCAAACAATGCTTCTTATACTTTGGCCTTTTCCCTCAGGGCTATTCCATTAGTTGCAAGAGGCTTATTCGCTTGTGGGTAGCAGAGGATTTTGTAGAAGGAGATACCCAGAACAAATTAATGGAGGAATTTGGAGGTGAATACCTGGCTGAACTAATCTGTAGAGGCTTGGTTCATGCTTCACAAGTTGATTTTGATGGAATACCTAGAAGCTGTCATGTGTATAACCTCATGCATGAGATCATAGCTAGTATTTGTAAAGACCAAATGTTTTGTCATGTATTGGAAGATGTAAGGACACCAGTGAACTCCAACATGGATTTCATTCATAGGCGTTTATCAATTATAAAGAAGAATGATTCTGCTACTATGGAAAGAGACCAAAAGTGGGGGAAAGTTAGGTCTTGTTTTGTTTTCGATGATGCTAAGAAGTGGCTGCTGAACAACCATTTTTTCTCTAGTTTTGAGTTTCTGATTCGATTAGACTTGTCTGATGCATGTCTATCTGTCGATGTTCTTCCTGAACAAGTTGGTAATCTATTGAACTTGAAATACTTGAGCCTAAGGAACACCAACATCATATCACTTCCGAAGTCCATTGGAAACCTAGTGAATCTGCAGACTCTAGACCTAAAACAAACTAAATTGCATGAAGTGAAGATCGATAAGCTTGTCAAGTTACGCCATCTCCTAGCTTACTATGTCAGTGATCAAAGTTCAGAATTGTACTGTTTAGAAGGACTAAGGTTAAGTGAAGGAGTTCAAAATCTAGAATCATTGCAGAATCTATCATATTTAGATGTATCTGGTGGTAGAATAATAAAGGGACTGCAAAAACTAACGAAGTTAAGGAAGCTGGGAATTATAAAGCTAGAAGCAAAACATGGTGAAGCACTGTGCAATTCTATAGAGCACATGATCAATCTATGTTCTCTAAGCATTGGGGCTTTGGGAAAACAAGGCATGCTAAAGTTACAATCTTTAAAACCTCCATTGTCCCTTAAACGCCTTTACCTATATGGGCGTTTAGGAGAACTTCCAACATGGATATCAACTCTTCCAAATCTTATCAGATTGTACTTGAAGTGGTCTGATCTAAAGCAAGATCCATTACATTACCTTAAGGACCTGCCACAATTGTTGCACCTTGAGTTGTATGATGCATATAAAGGTGAACGGTTGCATTTCGGTAATGGATGGTTGAAACTGAAGGTTTTGTACTTAGGATTGTTGCCAAACTTGAAGACCATAGAGATTGGTAAGGGAAAAGTTCCTTGTCTTGAAGTATTGAAGATAGGGAGATGCCATCAAATGATAAGGCTCCCCAAAGATATACTAAACTTGAAGCATCTTGAAAAGCTTTATCTTTATGATATGCACGAACAGTTTATAAAAAGATTATGTGATGAGCGAAGTGAAGATTTTTGGATTATTAACAAAATACCTCTCTTGGAATACTCCAACAACGACCATTTTGCCTCTTTTTCATGA 2700 0.3796 MAESAVTILALLAENLLKLLKDEGRILRGVHKDVEQIENLVNKIIPFMKNAEEKVLIEESVKIWMNGLRKVVFRMEDVVHLYLFKVAKRDGMMKKIITVKHRHRISSEIKDIRKTLDDLFSISKGLQLQPFHGDTLPNIIPRPHFVEESQLVGIEHNMQKFRDWLAKAKSPLLVVVGPPGIGKTSIVKNVYNKQTKLNQQKKKKDFHFCVWITMTQADSWYPIMEIKEEILKADPRGSTSLRSATRENLIEKLREYFTDKRCLIVLDDVKELKIWNVIQFAIPQHRVIITTQRDDFPNNIGSDTTVEKIMLEPLSLENALKLFHQKVKHVQFPELSQFSKEFMEKCNGVPLAIVAISSLLSTMKSANEWQRVRDDLGSLLQSHHHLKTFQLVLLQSYQELPYRLKQCFLYFGLFPQGYSISCKRLIRLWVAEDFVEGDTQNKLMEEFGGEYLAELICRGLVHASQVDFDGIPRSCHVYNLMHEIIASICKDQMFCHVLEDVRTPVNSNMDFIHRRLSIIKKNDSATMERDQKWGKVRSCFVFDDAKKWLLNNHFFSSFEFLIRLDLSDACLSVDVLPEQVGNLLNLKYLSLRNTNIISLPKSIGNLVNLQTLDLKQTKLHEVKIDKLVKLRHLLAYYVSDQSSELYCLEGLRLSEGVQNLESLQNLSYLDVSGGRIIKGLQKLTKLRKLGIIKLEAKHGEALCNSIEHMINLCSLSIGALGKQGMLKLQSLKPPLSLKRLYLYGRLGELPTWISTLPNLIRLYLKWSDLKQDPLHYLKDLPQLLHLELYDAYKGERLHFGNGWLKLKVLYLGLLPNLKTIEIGKGKVPCLEVLKIGRCHQMIRLPKDILNLKHLEKLYLYDMHEQFIKRLCDERSEDFWIINKIPLLEYSNNDHFASFS 899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02383 899 CDD RX-CC_like 22 121 IPR038005 -
Vimu2g02383 899 Gene3D - 9 116 - -
Vimu2g02383 899 Gene3D Ribonuclease Inhibitor 520 640 IPR032675 -
Vimu2g02383 899 Gene3D - 141 307 IPR027417 -
Vimu2g02383 899 Gene3D Ribonuclease Inhibitor 641 876 IPR032675 -
Vimu2g02383 899 SMART AAA_5 169 316 IPR003593 GO:0016887
Vimu2g02383 899 FunFam Probable disease resistance protein At1g63360 397 487 - -
Vimu2g02383 899 PRINTS Disease resistance protein signature 346 360 - -
Vimu2g02383 899 PRINTS Disease resistance protein signature 172 187 - -
Vimu2g02383 899 PRINTS Disease resistance protein signature 256 270 - -
Vimu2g02383 899 PRINTS Disease resistance protein signature 604 620 - -
Vimu2g02383 899 Gene3D - 314 396 IPR042197 -
Vimu2g02383 899 PANTHER DISEASE RESISTANCE PROTEIN RP 67 838 IPR044974 GO:0006952
Vimu2g02383 899 SUPERFAMILY L domain-like 478 871 - -
Vimu2g02383 899 Pfam Rx N-terminal domain 9 96 IPR041118 -
Vimu2g02383 899 Gene3D - 397 488 IPR036388 -
Vimu2g02383 899 Pfam NB-ARC domain 155 397 IPR002182 GO:0043531
Vimu2g02383 899 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 136 411 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02383 Vimu-Chr2 19414686 19418694 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02383 576 822 Receptor kinase-like Gene Family AT3G47570 28.000 9.04e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02383 K13457 - gmx:100779508 885.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02383 2 19414686 19418694 Vimu2g02383 2 19414686 19418694 ECH