Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02376 ATGGCGGACTCCGACAACGACTCCGGCGGCACGCACAACACCGGCAAGGGCAGCGAGATGTCGCCGCGGGAGCAGGACCGGTTTCTGCCGATCGCAAACGTGAGTCGCATCATGAAGAAGGCGCTTCCGGCGAACGCAAAGATCTCGAAGGACGCGAAGGAGACGGTCCAGGAGTGCGTGTCGGAATTCATCAGCTTCATCACTGGCGAGGCCTCCGACAAGTGCCAGCGCGAAAAGCGAAAGACGATCAACGGCGACGATCTTCTTTGGGCGATGACGACTCTAGGCTTCGAGGACTACGTGGAGCCTCTGAAGGTCTACCTTCAGCGCTTTAGAGAAATGGAAGGAGAGAAGACCGTGGCGGCGCGTGACAATGGTAGTTATGGTGCTGGTGGGATCATGATGCATCAGGGACACGTGTACGGTTCTGGTGGGTTCCATCAAGTGGGTGGCAGTGGTGCTGCTATCAAGGGTGGGCCTGCGTATCCTGGGCCTGGATCCAATGCGAGTCGGCCTAGATAG 522 0.5843 MADSDNDSGGTHNTGKGSEMSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREMEGEKTVAARDNGSYGAGGIMMHQGHVYGSGGFHQVGGSGAAIKGGPAYPGPGSNASRPR 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02376 173 MobiDBLite consensus disorder prediction 154 173 - -
Vimu2g02376 173 ProSitePatterns NF-YB/HAP3 subunit signature. 59 75 IPR003956 GO:0005634|GO:0006355|GO:0043565
Vimu2g02376 173 MobiDBLite consensus disorder prediction 1 27 - -
Vimu2g02376 173 MobiDBLite consensus disorder prediction 1 18 - -
Vimu2g02376 173 FunFam Nuclear transcription factor Y subunit B-3 17 139 - -
Vimu2g02376 173 PRINTS CCAAT-binding transcription factor subunit A signature 94 112 - -
Vimu2g02376 173 PRINTS CCAAT-binding transcription factor subunit A signature 56 74 - -
Vimu2g02376 173 PRINTS CCAAT-binding transcription factor subunit A signature 75 93 - -
Vimu2g02376 173 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 28 92 IPR003958 -
Vimu2g02376 173 SUPERFAMILY Histone-fold 25 128 IPR009072 GO:0046982
Vimu2g02376 173 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 7 124 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vimu2g02376 173 Gene3D Histone, subunit A 16 131 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02376 Vimu-Chr2 19313260 19313826 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02376 1 122 CCAAT-HAP3 Transcription Factor Family AT4G14540 87.705 2.23e-74 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vimu2g02376 CBFD_NFYB_HMF 1.4e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02376 K08065 - gmx:100813580 304.679