Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02364 ATGGAGCATGGACCTTCCTTCTTTCACATTGATCAACATGTCAATTCAACTTCTGGTTTAACAATGGCTATGCAGCAAGAAAACAACTATGGCAACACAGAAACTGCAGCAGAAGGAGTTGAAATCCCTAATTTGATTGGGAGAGATAAGAGCAAGATGCCAATTACAAATGTGACAAAAATAATGAGAAAATATCTTCCAAACACTGCAAAAGTCTCTGATGGAGCCAAAGAGATGATTCAACTAAGTGCTACAAACTACATAACCCATGTAACAAGAAAAGCAAAAGAGAAGTGTCAAAGTGAGTACAGAAAGATTATGAATTCAGATGACTTGTTATGGGCCATTGAAAATGTCGGCTTTGATGAATACATTGGGCCTCTCAGTACTTTTCTCCAACGTTGTCGTCACTTTGAAGGACCTAATACTAATGGGCCTGCTTTTGGGCCTGACCTCAACCCTGTGGAAATGCCCCATCCTCCTCTACCACCTCCACCGCCGCCGCCGTCACCGTTGCCACCGCCGCCACCGCCGGTTGTTTGCTCATCTGGGTTAGACTTTTCCATGCAGCAAAACACAATGTTTGACCCAAATGGTGTGAGTGGGTACCTAGATGGTGTTGGTTGCTCAAACAATGCTTTTATCAACTTTGATCCTTTTTCTCTCTTCCAACAGGATCAGCTCTGA 687 0.4338 MEHGPSFFHIDQHVNSTSGLTMAMQQENNYGNTETAAEGVEIPNLIGRDKSKMPITNVTKIMRKYLPNTAKVSDGAKEMIQLSATNYITHVTRKAKEKCQSEYRKIMNSDDLLWAIENVGFDEYIGPLSTFLQRCRHFEGPNTNGPAFGPDLNPVEMPHPPLPPPPPPPSPLPPPPPPVVCSSGLDFSMQQNTMFDPNGVSGYLDGVGCSNNAFINFDPFSLFQQDQL 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02364 228 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 52 116 IPR003958 -
Vimu2g02364 228 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 43 143 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vimu2g02364 228 MobiDBLite consensus disorder prediction 142 179 - -
Vimu2g02364 228 PRINTS CCAAT-binding transcription factor subunit A signature 118 136 - -
Vimu2g02364 228 PRINTS CCAAT-binding transcription factor subunit A signature 80 98 - -
Vimu2g02364 228 PRINTS CCAAT-binding transcription factor subunit A signature 99 117 - -
Vimu2g02364 228 SUPERFAMILY Histone-fold 52 144 IPR009072 GO:0046982
Vimu2g02364 228 MobiDBLite consensus disorder prediction 153 179 - -
Vimu2g02364 228 Gene3D Histone, subunit A 45 144 IPR009072 GO:0046982
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02364 1 167 CCAAT-HAP3 Transcription Factor Family AT1G21970 36.458 2.52e-29 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vimu2g02364 CBFD_NFYB_HMF 1.9e-16 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02364 K08065 - cave:132173704 110.538
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02364 2 19179816 19184153 Vimu1g00298 1 1770335 1776036 PCT