Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02349 TCCCATATTGTTCTTACCACTAATAATACTCAACTTCCTTCCCCTCAAAACATTACTTTATCCAATCATATTGGGTCTGGTTGGGTTCAAATTTCCAACAACTCAAATCACTTATCTTCTTACAAATTGAAACCACATCATAAACGATATGAGCGTTGGACAGAAAATGAACACAGACTATTTCTTTTCGGACTTAAAGCTTGTGATGAAGAAGATTGGAAAGGCATTTCTGAATTATATGTTGTATCAAAGACTCCGTCTCAAGTAGCAAGTCATGCTCAAAAATACAAGATTCATCAAAAGGCCTCAACGAAAAATAAGAAGAGAAAAAGTATTCACAAGGTTTCTATTGAGCCTTCCAGACATGCTTTTCCTTCTCCTATCATGTCGTAA 393 0.3537 SHIVLTTNNTQLPSPQNITLSNHIGSGWVQISNNSNHLSSYKLKPHHKRYERWTENEHRLFLFGLKACDEEDWKGISELYVVSKTPSQVASHAQKYKIHQKASTKNKKRKSIHKVSIEPSRHAFPSPIMS 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02349 130 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 44 101 IPR017930 -
Vimu2g02349 130 Gene3D - 50 102 - -
Vimu2g02349 130 Pfam Myb-like DNA-binding domain 52 97 IPR001005 -
Vimu2g02349 130 CDD SANT 52 97 IPR001005 -
Vimu2g02349 130 NCBIfam myb-like DNA-binding domain, SHAQKYF class 48 100 IPR006447 GO:0003677
Vimu2g02349 130 MobiDBLite consensus disorder prediction 95 114 - -
Vimu2g02349 130 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 15 117 IPR043363 -
Vimu2g02349 130 MobiDBLite consensus disorder prediction 98 114 - -
Vimu2g02349 130 SUPERFAMILY Homeodomain-like 47 101 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02349 Vimu-Chr2 18977772 18978585 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu2g02349 Myb_DNA-binding 2.5e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02349 - - vra:106754347 199.519